RNA id: TU422292



Basic Information


Item Value
RNA id TU422292
length 254
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G371567
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15650978 ~ 15651436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAACCAGTAGTTTTTTGCATTTTTGGAATCGTAAAGATGCGGTTGCAGCAATGTCATCTTAGTCGTCGGATCATAGGACGTATCCATGTCTGGGAAGTTCTGGGGGATTCTCAGCTCGACAATGTAGAACATGCAGGTGAAGATGTCCTGAAGGTCATAAAAGTCGTCTCGGTCCACCTTACCTAACGACCTTGCAGCACCAATTGCCCACCGCTTACCGTCTCGTTGGGGTGGACGAGGAGGAGGTAGATCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU422261 lncRNA upstream 35843 15614205 ~ 15615135 (+) True G371544
TU422212 lncRNA upstream 160715 15489608 ~ 15490263 (+) True G371495
TU422205 lncRNA upstream 165989 15478373 ~ 15484989 (+) True G371489
TU422155 lncRNA upstream 229398 15421280 ~ 15421580 (+) True G371454
TU422154 lncRNA upstream 231677 15418977 ~ 15419301 (+) True G371453
TU422322 lncRNA downstream 36790 15688226 ~ 15688447 (+) True G371597
TU422323 lncRNA downstream 38615 15690051 ~ 15698691 (+) True G371598
TU422341 lncRNA downstream 61534 15712970 ~ 15713201 (+) True G371610
TU422343 lncRNA downstream 62893 15714329 ~ 15714595 (+) True G371612
TU422350 lncRNA downstream 140123 15791559 ~ 15793624 (+) True G371615
XM_036976911.1 mRNA upstream 59535 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA upstream 59535 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA upstream 59535 15464709 ~ 15591443 (+) True LOC110523300
XM_036976892.1 mRNA upstream 505458 15117224 ~ 15145520 (+) False uck1
XM_036976915.1 mRNA downstream 98755 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 101468 15752904 ~ 15756190 (+) False st6galnac4
XM_036976916.1 mRNA downstream 101575 15753011 ~ 15756122 (+) True st6galnac4
XM_021601897.2 mRNA downstream 104823 15756259 ~ 15772026 (+) False st6galnac6
XM_036976914.1 mRNA downstream 104871 15756307 ~ 15772026 (+) False st6galnac6
TU421847 other upstream 522161 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 597422 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 845507 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1282817 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1325083 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 140123 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 568170 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1084206 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1218998 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1218998 16870434 ~ 16882185 (+) True G372618

Expression Profile