RNA id: TU422341


Basic Information

Item Value
RNA id TU422341
length 232
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G371610
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15712970 ~ 15713201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttagccaaatacatttaaactcagtttcacaattcctgacatttaatcctagtaaaaaaatccctgttttaggtcacttaggatcactactttattttaagaatatgaaatgtcagaataatagtagagagaatgatttctttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttatattgtttaacttgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422323 lncRNA upstream 14279 15690051 ~ 15698691 (+) True G371598
TU422322 lncRNA upstream 24523 15688226 ~ 15688447 (+) True G371597
TU422292 lncRNA upstream 61534 15650978 ~ 15651436 (+) True G371567
TU422261 lncRNA upstream 97835 15614205 ~ 15615135 (+) True G371544
TU422212 lncRNA upstream 222707 15489608 ~ 15490263 (+) True G371495
TU422343 lncRNA downstream 1128 15714329 ~ 15714595 (+) True G371612
TU422350 lncRNA downstream 78358 15791559 ~ 15793624 (+) True G371615
TU422370 lncRNA downstream 102004 15815205 ~ 15815749 (+) True G371632
TU422377 lncRNA downstream 138169 15851370 ~ 15851721 (+) True G371639
TU422392 lncRNA downstream 156572 15869773 ~ 15870026 (+) True G371653
XM_036976911.1 mRNA upstream 121527 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA upstream 121527 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA upstream 121527 15464709 ~ 15591443 (+) True LOC110523300
XM_036976892.1 mRNA upstream 567450 15117224 ~ 15145520 (+) False uck1
XM_036976915.1 mRNA downstream 36990 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 39703 15752904 ~ 15756190 (+) False st6galnac4
XM_036976916.1 mRNA downstream 39810 15753011 ~ 15756122 (+) True st6galnac4
XM_021601897.2 mRNA downstream 43058 15756259 ~ 15772026 (+) False st6galnac6
XM_036976914.1 mRNA downstream 43106 15756307 ~ 15772026 (+) False st6galnac6
TU421847 other upstream 584153 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 659414 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 907499 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1344809 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1387075 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 78358 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 506405 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1022441 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1157233 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1157233 16870434 ~ 16882185 (+) True G372618

Expression Profile