RNA id: TU422392



Basic Information


Item Value
RNA id TU422392
length 254
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G371653
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15869773 ~ 15870026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGGATGTCCTGGCCGGAGGCCCATATTTGGACATGTATACGTCATCATGGACACAGGGTCATAAATAAAGATTTTGACCCGTGCTGTCTACTTTATTCTCTTTCACAGAGCAGGGGGAACAGCCTGGAGTCCTGTCTTCTTCAGTGTCTCCACCACCTCAGCCAACATGTTATTTTTCCTCAGAGTAGGCCTTGGAGTGAAGGTCTGATTGCACTGAGGACAGCTGTAGATGCCCTGATCATCTTGATCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU422377 lncRNA upstream 18052 15851370 ~ 15851721 (+) True G371639
TU422370 lncRNA upstream 54024 15815205 ~ 15815749 (+) True G371632
TU422350 lncRNA upstream 76149 15791559 ~ 15793624 (+) True G371615
TU422343 lncRNA upstream 155178 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 156572 15712970 ~ 15713201 (+) True G371610
TU422395 lncRNA downstream 17212 15887238 ~ 15916078 (+) True G371656
TU422407 lncRNA downstream 24349 15894375 ~ 15899296 (+) False G371661
TU422408 lncRNA downstream 24349 15894375 ~ 15899296 (+) True G371661
TU422424 lncRNA downstream 56740 15926766 ~ 15939264 (+) True G371672
TU422420 lncRNA downstream 65282 15935308 ~ 15936996 (+) False G371671
XM_021601910.2 mRNA upstream 11413 15852569 ~ 15858360 (+) True ptges
XM_036976903.1 mRNA upstream 30314 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 564237 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 564249 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 584569 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 584569 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 584773 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 74651 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 740956 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 816217 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1064302 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1501612 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 349580 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 865616 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1000408 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1000408 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1834087 17704113 ~ 17707757 (+) True G373726

Expression Profile