RNA id: TU422420


Basic Information

Item Value
RNA id TU422420
length 1297
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G371671
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15935308 ~ 15936996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTCAAATTTCATAAATATTTATTACATATCAATGAACAGAATTTACTACTTTCACAGCAGTGGTCTACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCCTACCATCTAACCATaacccatctaccatctaaccctccTACCATCTAACCATAACCCATCTTCCATCTAACCCATCTACCATCTAATCCTCCTACCATCTAACCAtctaacccatctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATAACCCATCTTCCATCTaacccatctaccatctaaccctcctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422395 lncRNA upstream 19230 15887238 ~ 15916078 (+) True G371656
TU422407 lncRNA upstream 36012 15894375 ~ 15899296 (+) False G371661
TU422408 lncRNA upstream 36012 15894375 ~ 15899296 (+) True G371661
TU422392 lncRNA upstream 65282 15869773 ~ 15870026 (+) True G371653
TU422377 lncRNA upstream 83587 15851370 ~ 15851721 (+) True G371639
TU422434 lncRNA downstream 4666 15941662 ~ 15945451 (+) True G371682
TU422442 lncRNA downstream 15606 15952602 ~ 15957635 (+) False G371689
TU422443 lncRNA downstream 15606 15952602 ~ 15957635 (+) True G371689
TU422464 lncRNA downstream 52890 15989886 ~ 15992865 (+) True G371706
TU422491 lncRNA downstream 94683 16031679 ~ 16032866 (+) False G371733
XM_021601910.2 mRNA upstream 76948 15852569 ~ 15858360 (+) True ptges
XM_036976906.1 mRNA upstream 95849 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 497267 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 497279 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 517599 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 517599 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 517803 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 140186 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 806491 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 881752 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1129837 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1567147 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 282610 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 798646 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 933438 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 933438 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1767117 17704113 ~ 17707757 (+) True G373726

Expression Profile