RNA id: TU422434


Basic Information

Item Value
RNA id TU422434
length 2069
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G371682
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15941662 ~ 15945451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAATGAGAAACTTCTAGGTACGTGTGCTTTTATCACGTTAGCAAATGATCAGCCAAGCCGCACTTCTTAACACCCGTCcccttaacctggaagccagctgcatcaatgtgtcagaggaaacaccattcaactgacgaccggagtcagcctgcaggcgcccgtcCCTCCAAATGTATGACTTCTAATCACTGCTGCTGTCTAGGTTTTGAGTTGTTGAAGATGATATGGGTCCTTTACCTGTCGCTGCTGGTGGAGGTCAATGTTCGTGTCTTTATCTCTTCCTCAGTGGTCTTCTTGctcatcttcctctgtttgccCGTGCTACTGTCTATCTTACTGCTAGGCTCCTCGGTCAAGCCTGGGAGGAACACACAGAATAAGATCATTCAGTAGGGGAATGTCATGCCCACTCAGTAAGAACCGACCTCAACACAACCGCTCAGTTAACCACTTACAGTAGATTAGTATGCtaggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctaggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacaGTAGATTAGGATGCTGGGATAGTTCTAGTGGGTTACAGTAGATTAGTatgctgggatggttctagtgggttagaTAGGTTAGTGTGCTGGGATGGTTCTAGGGGGTTACAGTAGATTAGTCtgctgggatggttctagtgggttacagtagactagtatgctgggatggttctagtgggttagaTAGGTTAGTGTGCTGGGATGGTTCTAGGGGGTTACAGTAGATTAGTatgctgggatggttctagtgggttacagtagactagtatgctgggatggttctagtgggttacagtagattaatatgctgggatggttctagtgggttagataggttagtgtgctgggatggttctagtaggttacagtagattagtgtgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtaggttacagtagattagtatgctgggatggttctagtgggttacaGTAGATTAGGATGCTGGGATAGTTCTAGTGGGTTACAGTAGATTAGTatgctgggatggttctagtgggttagataggttagtgtgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattatcatgctgggatggttctagtgggttacaGTAGACTAGTATGCtaggatggttctagtgggttagataggttagtgtgctgggatggttctagtgggttagataggttagtgtgctgggatggttctagtgggttacagtagactagtatgctgggatggttctagtgggttataGTAGATTAGTatgctgggatggttctagtgggttagataggttagtgtgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttataGTAGATTAGTatgctgggatggttctagtgggttacagtagattagtatgctaggatggttctagtgggttataGTAGATTAGTatgctgggatggttctagtgggttagaTAGGTTAGTGTGCTGGGATGGTTCTAGGGGGTTACAGTAGATTAGTCtgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttagataggttagtgtgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttacagtagattagtatgctgggatggttctagtgggttataGTAGATTAGTatgctgggatggttctagtgggttacagtagattagtatgctaggatggttctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422424 lncRNA upstream 2398 15926766 ~ 15939264 (+) True G371672
TU422420 lncRNA upstream 4666 15935308 ~ 15936996 (+) False G371671
TU422423 lncRNA upstream 4666 15935308 ~ 15936996 (+) False G371671
TU422418 lncRNA upstream 4666 15935377 ~ 15936996 (+) False G371671
TU422421 lncRNA upstream 4666 15935377 ~ 15936996 (+) False G371671
TU422442 lncRNA downstream 7151 15952602 ~ 15957635 (+) False G371689
TU422443 lncRNA downstream 7151 15952602 ~ 15957635 (+) True G371689
TU422464 lncRNA downstream 44435 15989886 ~ 15992865 (+) True G371706
TU422491 lncRNA downstream 86228 16031679 ~ 16032866 (+) False G371733
TU422492 lncRNA downstream 86732 16032183 ~ 16032866 (+) True G371733
XM_021601910.2 mRNA upstream 83302 15852569 ~ 15858360 (+) True ptges
XM_036976906.1 mRNA upstream 102203 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 488812 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 488824 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 509144 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 509144 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 509348 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 146540 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 812845 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 888106 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1136191 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1573501 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 274155 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 790191 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 924983 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 924983 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1758662 17704113 ~ 17707757 (+) True G373726

Expression Profile