RNA id: TU422985


Basic Information

Item Value
RNA id TU422985
length 1279
lncRNA type intronic
GC content 0.48
exon number 2
gene id G372130
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15990650 ~ 15995471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagagagggagaaagaacacagagagggagaaagaacacagagagagagagagagggagaaagaacagagagagggagaaagaacacagagagagagagggagaaagaacacagagggagaaagaacacagagagagagagagggagaaagaacacacagagagagggagaaagaacagagagagagagggagaaagaacacacagagagagggagaaagaacagagagagagggagaaagaacacagatagagagggagaaagaacatagagagagagagggagaaagaacacacagagagagagggagaaagaacacgcagagagagagggagaaagaacacacagagagagggagaaagaacagagagagagggagaaagaacacagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacacagagagaaagggagaaagaacacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagagcgagaaagaacacagagagagagagggagaaataacacagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagggagaaagaacacagagggggaaataacacagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacagagagagagggagaaagaacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagggagaaagaacacacagagagagagggagaaagaacacagagagagagagggagaaagaacacagagagagagagagggagaaagaacacacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422959 lncRNA downstream 33053 15952602 ~ 15957597 (-) True G372115
TU422956 lncRNA downstream 50093 15939731 ~ 15940557 (-) True G372113
TU422933 lncRNA downstream 73605 15916550 ~ 15917045 (-) True G372102
TU422877 lncRNA downstream 84422 15876294 ~ 15906228 (-) True G372063
TU422876 lncRNA downstream 115835 15873265 ~ 15874815 (-) False G372063
TU422995 lncRNA upstream 13817 16009288 ~ 16009780 (-) True G372139
TU423005 lncRNA upstream 24640 16020111 ~ 16059536 (-) True G372148
TU423012 lncRNA upstream 35449 16030920 ~ 16031488 (-) True G372155
TU423013 lncRNA upstream 36241 16031712 ~ 16033430 (-) True G372156
TU423019 lncRNA upstream 46687 16042158 ~ 16042534 (-) True G372160
XM_036976899.1 mRNA downstream 64007 15902216 ~ 15926643 (-) False LOC110523317
XM_036976900.1 mRNA downstream 64007 15902216 ~ 15926643 (-) True LOC110523317
XM_036976918.1 mRNA downstream 91356 15898677 ~ 15899294 (-) True LOC118964569
XM_036976901.1 mRNA downstream 95472 15872778 ~ 15895178 (-) True LOC118964568
NM_001160625.2 mRNA downstream 175848 15810578 ~ 15814802 (-) True c5h9orf78
XR_005051938.1 mRNA upstream 208219 16203690 ~ 16205002 (-) True LOC118964745
XM_036976925.1 mRNA upstream 222843 16218314 ~ 16410243 (-) False si:dkey-34e4.1
XM_036976926.1 mRNA upstream 249446 16244917 ~ 16410253 (-) False si:dkey-34e4.1
XM_021601918.2 mRNA upstream 421510 16416981 ~ 16422022 (-) True LOC110523325
XM_021601311.2 mRNA upstream 432032 16427503 ~ 16430780 (-) True LOC110522841
TU422973 other downstream 9435 15978502 ~ 15981215 (-) True G372123
TU422972 other downstream 14534 15975606 ~ 15976116 (-) True G372122
TU422760 other downstream 292321 15696092 ~ 15698329 (-) True LOC110523302
TU421988 other downstream 865861 15123475 ~ 15124789 (-) True G371294
TU421926 other downstream 995491 14993128 ~ 14995159 (-) True LOC110524957
TU424074 other upstream 938764 16934235 ~ 16942191 (-) True LOC110523341
TU424339 other upstream 1128566 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 1493555 17489026 ~ 17521487 (-) True LOC110523354
TU425424 other upstream 2007349 18002820 ~ 18003170 (-) True G374189
TU426081 other upstream 2562669 18558140 ~ 18559167 (-) False G374786

Expression Profile