RNA id: TU422493



Basic Information


Item Value
RNA id TU422493
length 211
lncRNA type intronic
GC content 0.39
exon number 2
gene id G371734
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16032454 ~ 16032686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttaattcagcgtggttacagggttaattcagagtggttacagggttaattccatagTGGTTACAGgtttaaaacagaaacaactcaaaaGGTTACTTTTAAGTAttaattccgagtggttacagggttaactcagtgtggttacagggttaattcagcgtggttacagggttaattcagtgtggttacagggttaattcagcgtggttac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU422464 lncRNA upstream 39589 15989886 ~ 15992865 (+) True G371706
TU422442 lncRNA upstream 74819 15952602 ~ 15957635 (+) False G371689
TU422443 lncRNA upstream 74819 15952602 ~ 15957635 (+) True G371689
TU422434 lncRNA upstream 87003 15941662 ~ 15945451 (+) True G371682
TU422422 lncRNA upstream 95458 15935377 ~ 15936996 (+) True G371671
TU422502 lncRNA downstream 21912 16054598 ~ 16055043 (+) True G371743
TU422507 lncRNA downstream 27327 16060013 ~ 16060423 (+) True G371748
TU422582 lncRNA downstream 129008 16161694 ~ 16165804 (+) True G371818
TU422586 lncRNA downstream 131151 16163837 ~ 16164994 (+) True G371819
TU423119 lncRNA downstream 168097 16200783 ~ 16201146 (+) True G372255
XM_021601910.2 mRNA upstream 174094 15852569 ~ 15858360 (+) True ptges
XM_036976906.1 mRNA upstream 192995 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 401577 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 401589 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 421909 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 421909 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 422113 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 237332 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 903637 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 978898 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1226983 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1664293 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 186920 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 702956 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 837748 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 837748 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1671427 17704113 ~ 17707757 (+) True G373726

Expression Profile