RNA id: TU422582


Basic Information

Item Value
RNA id TU422582
length 1209
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G371818
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16161694 ~ 16165804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGACACTCTTCCTACTAACAAATGTACATTCTCCTCCACCACTTATCGGTTTCTGTgtcaaggaggagagaggatgaaggaCCGACTTTGGGCCAAATGAAAAAAGGCCCTGATATTAGACATCTGATGATCCAAAAAGACAAGAGGCCTGTATATTGCAGAGATAATACTTAGGAAACTATACAGGCCTACAAACATTTAGAAGCAAGAGCAGATcataacattaggttgcatcaAATCAACATAACATTAGGTGGCATCAGAACaacataacattaggttgcaACAGATTAgcataacattaggttgcatcagAACAACATAACATTAGGGTGCATCAGATAGCATAACATTAAGTTGCATCAGATCaacataacattaggttgcatcatACAGCATAACATTCGGTTGCATCAGAACAACATAACATTAGGTTGTAGCAGATCATAACATTAGGCTGCATCAGATGAgcataacattaggttgcatcatACAGCATAACATTAGGTTGTAGCAGATCATAACATTAGGTTGTAGCAGATcataacattaggttgcatcagacaacataacattaggttgcatcagAACAACATACCATTATGTTGGATCAGATCAGGataacattaggttgcatcagATCAACATAACATTAGGTTGTAGCAGATCATAACATTAGGCTGCATCAGATGAgcataacattaggttgcatcatacagcataacattaggttgcatcattcagcataacattaggttgcatcagacaacataacattaggttgcatcagatcaacataacattaggttgcatcatacagcataacattaggttgcatcatacaacataacattaggttgcatcatacagcataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcagATCAACATAACATTAGGTCGCATCAGATAgcataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcatACAACATAACATTACGTTGTAGCAGATcataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422507 lncRNA upstream 101271 16060013 ~ 16060423 (+) True G371748
TU422502 lncRNA upstream 106651 16054598 ~ 16055043 (+) True G371743
TU422491 lncRNA upstream 128828 16031679 ~ 16032866 (+) False G371733
TU422492 lncRNA upstream 128828 16032183 ~ 16032866 (+) True G371733
TU422493 lncRNA upstream 129008 16032454 ~ 16032686 (+) True G371734
TU423119 lncRNA downstream 34979 16200783 ~ 16201146 (+) True G372255
TU423135 lncRNA downstream 45319 16211123 ~ 16211413 (+) True G372270
TU423144 lncRNA downstream 50868 16216672 ~ 16216871 (+) True G372279
TU423146 lncRNA downstream 52524 16218328 ~ 16220649 (+) False G372281
TU423155 lncRNA downstream 81479 16247283 ~ 16247571 (+) True G372288
XM_021601910.2 mRNA upstream 303334 15852569 ~ 15858360 (+) True ptges
XM_036976906.1 mRNA upstream 322235 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 268459 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 268471 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 288791 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 288791 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 288995 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 366572 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1032877 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1108138 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1356223 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1793533 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 53802 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 569838 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 704630 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 704630 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1538309 17704113 ~ 17707757 (+) True G373726

Expression Profile