RNA id: TU423174



Basic Information


Item Value
RNA id TU423174
length 447
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G372304
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16283157 ~ 16302922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgcGACAGCCACCTGTgtgtgttgctgctgctgctggatcTGCTGTTGGAGGAGCTGGAGGTAGTGATGCGCCGCCAGCGGGGTCAGAAGCGGAGAGCAGGGGCTGCTGGGAGAAACCACGCCATTCGGAGACACCATGTAGCTGGAGCGGCTCTCATAGTCCTTCGCGGGTGCCTGTTCATTATAGGATAGACACTTGTGGTTTAGCTGCACCAATCAAGCAGTGAAGTGTGTAGTGAAGCATGGCATTAGTGGTCAAAACCATTTATCTTGTGGCAACGGGGGAGCAGGGTTGCAAAATGCAGCAAAATGCAATTACATTACGCAATTATACCATTTATAAAATAgtggtatatatatttttatagactagctaaaataaataagtaaaaatGTACCAATGGATGATGAGAATTTTCTGTTAAAAAAGTGGAggtgaaaaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU423155 lncRNA upstream 35586 16247283 ~ 16247571 (+) True G372288
TU423146 lncRNA upstream 62508 16218328 ~ 16220649 (+) False G372281
TU423144 lncRNA upstream 66286 16216672 ~ 16216871 (+) True G372279
TU423135 lncRNA upstream 71744 16211123 ~ 16211413 (+) True G372270
TU423119 lncRNA upstream 82011 16200783 ~ 16201146 (+) True G372255
TU423199 lncRNA downstream 26486 16329408 ~ 16329658 (+) True G372329
TU423201 lncRNA downstream 28169 16331091 ~ 16331347 (+) True G372331
TU423203 lncRNA downstream 32263 16335185 ~ 16335553 (+) True G372333
TU423212 lncRNA downstream 50102 16353024 ~ 16353240 (+) True G372342
TU423215 lncRNA downstream 52170 16355092 ~ 16355312 (+) True G372345
XM_021601910.2 mRNA upstream 424797 15852569 ~ 15858360 (+) True ptges
XM_036976906.1 mRNA upstream 443698 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 131341 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 131353 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 151673 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 151673 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 151877 16454799 ~ 16470342 (+) False LOC110523327
TU423147 other upstream 62224 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 488035 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1154340 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1229601 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1477686 14804661 ~ 14805471 (+) True LOC118964542
TU423245 other downstream 432720 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 567512 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 567512 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1401191 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1764521 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile