RNA id: TU423542


Basic Information

Item Value
RNA id TU423542
length 2069
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G372570
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16771410 ~ 16773528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTATTTACTAACAAACAGCAGATATTGAAATAGTTCAATGCAATGTTCTCTGCACACACAACTCTCAGCTTCCAGAGAAGAATTGGGAAAAAAATCTATACAAAAAATTCCTGGAGAGAAACTAGCGCTGGTCCGGTTCTCATCATCATGGTAACAGTATTCTACATTTGTACCTGAAAACTACGAGTTTAAATCTGCATCCTTGATTCATATTCTCTCTAGataagcatatatatatatatatatatattaatataccGTTTTTTACCCCCATCAAAAAACCCAACATTTCTCCCAAACAATATAAGTAGCATAAGTAATGATGACCTTTTTACAATATACATTGTCTTTTAATACAATATAAATGGACTTGAAACATAATCAACAGTACAATATTGTTAAAACAGCTGGGAAATATTTACTTTGAATCACATAGTTAATCCCTTGTCTTAGCATGTCATTAATTAGTGTATGTCTGTAATTAGATCAACTAAAAAAACGCTTTATGGGGTGGAGAACGACTGAGGTAACCAAGATGGCCGCCAAAATAGGCAACCCCTATCATGGTTGCTGGGAAACATGGGTCGTATTCATTaagcaccaaacggaagaaaacgtactgaaacagggagggactacctagACTTGTCCAATAAGGACAATACTTGTccaatttatttttgttttccgtttcaaaacattttgctacagtgtgcactaATAAATTTAACCCTGGTAGAGTCTCTGGTCCACGCCAAAGACTCCAATCTCCATTCCAAACCCCTATGTTAGCAGATCTGAAAGAACCAGATGGGTGCTGCCATCACCTTTTCATCAGACCTGTTTACACTAAGGGCTAGGGCCTAGGAGCAAAGGGTAGACAACTAGGGGCCAGGGGAAGGTGTTAGGGGAAGGACCAAGGGGTTGATTCTGGACCAGGCCTTTATCTAGGCGTTTCCTGTCTCCACAGGGCACTGGGTAACATATGTATTCCCTGCACACATGTGTAGTTACACTGCAACATGGGAAATTGAGTTTCCTGAAagagtctctcacacacacacacacaacttctgtgtgtgtgtggaatgttaATGGAACTCAACCTACTCGGCTGTCAAGGATGAGAAAATCAACAAGGTGCTTTAGAtgtgacagacacaaacacattgtCTATTCTGTATGGTGTTTATGTGGACTTGTGTCTGTTTTATCTATTCTGTATGGTGTCTGGGTAAATAAAGGGGATTGTGATTGTCTCTATGGCAACTTGGCCAAACAAAAGGAATGCATGAAAGCAGACTGGGTCAGAGTTGGCACGCCGTAAGAGAGGTCAAATGGGAGagggcacgcacacacagctcagacctGAAGCTAAACATTGACTGTGCAAAGGAATGGACACAAGCGTTGCATCAGCTCTCTTAAAGGGATAGTATGAACATTTTCAAATACATATTTGTCTATCTAGACCTAATGGGAGTGTATCAAATAAAATATGGACGTATAATCAAACAGCTAAAGCAAATCACCAAAAGCGGTGTACACATTTCTGTGAAAAAGGGCTTTTTTTGACCAACCTGTGTCTAATGCTTGGATGGACGGGTTGTGACAACACACACAGGGGGTTGACGTGAGTTGCTTTGGCACACAGATAGGCTAATAATGAAGGAACAGGCAATGTAACTTTTAGGCAAAGGAGGCTAATTTACAACAGGGAGgagaggtgcacacacacacacacacacacacacacacgattggcATGAATGTGAAACGTACAATGAATGAGGAAAACGGCTGAGGATAGTGCAGTagccacacacaccactcacacagATGCTCACTCCAGCCaggtccaatcactgcattccagAGATAAGAGATTCACTGATAAAAATATAGATCTTTTTTAAAAAGCCTCCTTGTTGGTTGTCTGAGTAACACATAGTTCTGACAGAGAGAACTTCATTACCCATGAGCCTCCTCTTCCGTTGAACTTTCCTGGGATTTACTGCCACCTGTGGAACCCAgccaatgagagagagggggaggccgTGAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423530 lncRNA upstream 19143 16751244 ~ 16752267 (+) True G372560
TU423244 lncRNA upstream 33190 16735642 ~ 16738220 (+) False G372373
TU423248 lncRNA upstream 76859 16690958 ~ 16694551 (+) True LOC110523336
TU423481 lncRNA upstream 82425 16624136 ~ 16688985 (+) True G372513
TU423488 lncRNA upstream 131515 16637303 ~ 16639895 (+) True G372518
TU423570 lncRNA downstream 36403 16809931 ~ 16810186 (+) True G372589
TU423578 lncRNA downstream 49500 16823028 ~ 16823918 (+) True G372597
TU423580 lncRNA downstream 53464 16826992 ~ 16827246 (+) True G372599
TU423582 lncRNA downstream 54886 16828414 ~ 16829061 (+) True G372601
TU423583 lncRNA downstream 56213 16829741 ~ 16830059 (+) True G372602
XM_021601952.2 mRNA upstream 27343 16741353 ~ 16744067 (+) True purbb
XM_036976947.1 mRNA upstream 36281 16732636 ~ 16735129 (+) True ved
XM_036976935.1 mRNA upstream 45401 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA upstream 45401 16712184 ~ 16726009 (+) True polm
XR_005051667.1 mRNA upstream 77980 16690905 ~ 16693430 (+) False LOC110523336
XM_021601959.2 mRNA downstream 175874 16949402 ~ 16967809 (+) True LOC110523342
XM_021601962.2 mRNA downstream 221866 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA downstream 221868 16995396 ~ 17012011 (+) True st8sia5
XM_036976540.1 mRNA downstream 246059 17019587 ~ 17071539 (+) False LOC110522812
XM_021601970.2 mRNA downstream 346259 17119787 ~ 17125777 (+) True atp5fa1
TU423245 other upstream 32910 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 550477 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 976288 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1642593 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1717854 15048178 ~ 15053556 (+) True LOC110519479
TU423600 other downstream 96906 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 96906 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 930585 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1293915 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 3209733 19983261 ~ 19983848 (+) True G376320

Expression Profile