RNA id: TU423582



Basic Information


Item Value
RNA id TU423582
length 648
lncRNA type intronic
GC content 0.46
exon number 1
gene id G372601
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16828414 ~ 16829061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctctcctatcttacctgcctaaccacttttacctaatttagcaccacctggtgccctaaccaaaatacaggggttggtccgcccaggtcttacctagtgtgcctagacagtgaatatactacgggtatatgtatgcccgcgggcctcttgcctaagcactcccaaggtgccttcccctttccccctgggaacaaatgaaacagaatattaaacaatttcacaaacaaactaagaaacaaaggacatcaactaagctctacctgagcaacaaactcacagaacataccacttcccagcaatgaactcccagcaaatCAACCTCCAGCAAAAATCTCTATCACAAtcaatcgctctgcaatgacctcccagcaaatctctctatcacaaacaatcgctctgcaatgacctcccagcaaatctctctctcctgaacagaacactggcttttatatagcttcagaatgaatgtgtaactggagacagctgtgtcttgacgagggggcggggtcagctctccaattagccctggagtcgaccaatcagctgcttgagggatttcaggaagccatttcctgaaataaaacacatgcaaatacacaaactacaacacataaactggggaacgtaacaatgTCAACGTGCCCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU423580 lncRNA upstream 1168 16826992 ~ 16827246 (+) True G372599
TU423578 lncRNA upstream 4496 16823028 ~ 16823918 (+) True G372597
TU423570 lncRNA upstream 18228 16809931 ~ 16810186 (+) True G372589
TU423542 lncRNA upstream 54886 16771410 ~ 16773528 (+) True G372570
TU423530 lncRNA upstream 76147 16751244 ~ 16752267 (+) True G372560
TU423583 lncRNA downstream 680 16829741 ~ 16830059 (+) True G372602
TU423584 lncRNA downstream 1588 16830649 ~ 16830900 (+) True G372603
TU423586 lncRNA downstream 10165 16839226 ~ 16839431 (+) True G372605
TU423587 lncRNA downstream 11428 16840489 ~ 16841034 (+) True G372606
TU423591 lncRNA downstream 25168 16854229 ~ 16854450 (+) True G372610
XM_021601952.2 mRNA upstream 84347 16741353 ~ 16744067 (+) True purbb
XM_036976947.1 mRNA upstream 93285 16732636 ~ 16735129 (+) True ved
XM_036976935.1 mRNA upstream 102405 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA upstream 102405 16712184 ~ 16726009 (+) True polm
XR_005051667.1 mRNA upstream 134984 16690905 ~ 16693430 (+) False LOC110523336
XM_021601959.2 mRNA downstream 120341 16949402 ~ 16967809 (+) True LOC110523342
XM_021601962.2 mRNA downstream 166333 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA downstream 166335 16995396 ~ 17012011 (+) True st8sia5
XM_036976540.1 mRNA downstream 190526 17019587 ~ 17071539 (+) False LOC110522812
XM_021601970.2 mRNA downstream 290726 17119787 ~ 17125777 (+) True atp5fa1
TU423245 other upstream 89914 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 607481 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1033292 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1699597 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1774858 15048178 ~ 15053556 (+) True LOC110519479
TU423600 other downstream 41373 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 41373 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 875052 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1238382 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 3154200 19983261 ~ 19983848 (+) True G376320

Expression Profile