RNA id: TU424215



Basic Information


Item Value
RNA id TU424215
length 213
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G373125
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17149056 ~ 17149268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGGGCCCATGGTGGAATAGTTGTCAGATACAACAAAGCATGACATCTCTTGAGGTATGTTACTGGTATATTCACATTCGAAGTCAACCATATCAAACTGGTGTTCTATGTTGTTCAATAGCTCCATGGTGCTGCACCGACGCATGGGCCTCTGGTCAGATGTTACCTGCGTGCGTAAAAACAGTCATTCATCACATGTATCCAAGACAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU424199 lncRNA upstream 36383 17112458 ~ 17112673 (+) True G373109
TU424154 lncRNA upstream 38563 17071632 ~ 17110493 (+) True G373075
TU424169 lncRNA upstream 79631 17069181 ~ 17069425 (+) True G373090
TU424152 lncRNA upstream 103055 17045538 ~ 17046001 (+) True LOC110522812
TU424150 lncRNA upstream 103819 17045014 ~ 17045237 (+) True G373073
TU424218 lncRNA downstream 2677 17151945 ~ 17152244 (+) True G373128
TU424222 lncRNA downstream 9042 17158310 ~ 17158643 (+) True G373132
TU424223 lncRNA downstream 9438 17158706 ~ 17158963 (+) True G373133
TU424225 lncRNA downstream 11999 17161267 ~ 17161493 (+) True G373135
TU424227 lncRNA downstream 12352 17161620 ~ 17162058 (+) True G373137
XM_021601254.2 mRNA upstream 1278 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA upstream 1278 17131710 ~ 17147778 (+) True LOC100136246
XM_021601970.2 mRNA upstream 23279 17119787 ~ 17125777 (+) True atp5fa1
XM_036976540.1 mRNA upstream 77517 17019587 ~ 17071539 (+) False LOC110522812
XM_021601962.2 mRNA upstream 137045 16995394 ~ 17012011 (+) False st8sia5
XM_021601976.2 mRNA downstream 42148 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA downstream 42148 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA downstream 42148 17191416 ~ 17217186 (+) True LOC110523352
XM_036976967.1 mRNA downstream 86544 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA downstream 86547 17235815 ~ 17242911 (+) True LOC110523353
TU423600 other upstream 266871 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 266871 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 410556 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 928123 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1353934 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 554845 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 918175 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2833993 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3442212 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3594316 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile