RNA id: TU424222



Basic Information


Item Value
RNA id TU424222
length 334
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G373132
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17158310 ~ 17158643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATCATGCATTCTCAATCTACTTCATAACAACAAAGTGTTTATTTTAGGTTCTGTAGGATGCTCATCTGGTTGTTAGATATCTGGTTAGATTAGATGTGCTTCATATGAACAAAGTATAGAATAGAAATGGACTGATGATCGATTCAAAGAAACCATTTGAGTATCCTGCAAGACTTATTTGGTGTTGTTTTGTCTAGCAGTATGAATTGTATAAGTGGCCATCCAGTACAGTTGAAGTAAggacctgtgttgttgtgtacAGCAGTTTATGGTTATGGAACAAAAAGTGGACATACATGGCCATGTTTCCTCTTCTATGATGCTCACCACAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU424218 lncRNA upstream 6066 17151945 ~ 17152244 (+) True G373128
TU424215 lncRNA upstream 9042 17149056 ~ 17149268 (+) True G373125
TU424199 lncRNA upstream 45637 17112458 ~ 17112673 (+) True G373109
TU424154 lncRNA upstream 47817 17071632 ~ 17110493 (+) True G373075
TU424169 lncRNA upstream 88885 17069181 ~ 17069425 (+) True G373090
TU424223 lncRNA downstream 63 17158706 ~ 17158963 (+) True G373133
TU424225 lncRNA downstream 2624 17161267 ~ 17161493 (+) True G373135
TU424227 lncRNA downstream 2977 17161620 ~ 17162058 (+) True G373137
TU424233 lncRNA downstream 12757 17171400 ~ 17171617 (+) True G373143
TU424234 lncRNA downstream 13710 17172353 ~ 17230280 (+) True G373144
XM_021601254.2 mRNA upstream 10532 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA upstream 10532 17131710 ~ 17147778 (+) True LOC100136246
XM_021601970.2 mRNA upstream 32533 17119787 ~ 17125777 (+) True atp5fa1
XM_036976540.1 mRNA upstream 86771 17019587 ~ 17071539 (+) False LOC110522812
XM_021601963.2 mRNA upstream 146299 16995396 ~ 17012011 (+) True st8sia5
XM_021601976.2 mRNA downstream 32773 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA downstream 32773 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA downstream 32773 17191416 ~ 17217186 (+) True LOC110523352
XM_036976967.1 mRNA downstream 77169 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA downstream 77172 17235815 ~ 17242911 (+) True LOC110523353
TU423600 other upstream 276125 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 276125 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 419810 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 937377 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1363188 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 545470 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 908800 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2824618 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3432837 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3584941 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile