RNA id: TU424248



Basic Information


Item Value
RNA id TU424248
length 589
lncRNA type intronic
GC content 0.41
exon number 2
gene id G373157
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17236769 ~ 17237405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTATAATGATAACCTTAAATGATAACCTGAACGATTATCCGCATGATGTCTTTTGTTGTCCTTTTTACTGTTCTTTTTGCGCTCGATCATTCTCTTTTGTTCATGCTTTTCTcgctttcactgtgtgtgtgtgtgtgtgtgtgcgcaagtgtTTATAAGTGTACGTGTGTGGAAGTGCACATGCATATTCCACCGTTGGTAATGTCATACAGATCCTTCGTCATTGATGATGGTCATTAGGCCACTTTCGATATGGTCCCCcagggtgtgtttgtctgtgtgtgtctgtgtttatggtgagagggaggggggttgaCTGATCGTATATGCATTCATAAACACAGATTACATATTAATTTAAATATACAGTTGCATGCACTTTCATCTCTGTTTCCTTGTAGATTTTCACATTCTAATACAATATAATATGACGTGGGTGTGCACTATTTTGGCTGCATTTCTGTATGGTTCATACATCAATATTCCGTTCAGATTGGAGTGCATTCCTCAGTCTCTGCTGAATGTGAACACATATtcacaccctctctccccctccctctctccctccctctctccctctctctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU424234 lncRNA upstream 6489 17172353 ~ 17230280 (+) True G373144
TU424233 lncRNA upstream 65152 17171400 ~ 17171617 (+) True G373143
TU424227 lncRNA upstream 74711 17161620 ~ 17162058 (+) True G373137
TU424225 lncRNA upstream 75276 17161267 ~ 17161493 (+) True G373135
TU424223 lncRNA upstream 77806 17158706 ~ 17158963 (+) True G373133
TU424415 lncRNA downstream 7980 17245385 ~ 17245802 (+) True G373293
TU424416 lncRNA downstream 8507 17245912 ~ 17246427 (+) True G373294
TU424439 lncRNA downstream 27761 17265166 ~ 17265396 (+) True G373317
TU424476 lncRNA downstream 53130 17290535 ~ 17290797 (+) True G373353
TU424487 lncRNA downstream 61558 17298963 ~ 17299314 (+) True G373364
XM_021601976.2 mRNA upstream 19583 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA upstream 19583 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA upstream 19583 17191416 ~ 17217186 (+) True LOC110523352
XM_021601254.2 mRNA upstream 88991 17126356 ~ 17147778 (+) False LOC100136246
NM_001124510.1 mRNA upstream 88991 17131710 ~ 17147778 (+) True LOC100136246
XR_005051669.1 mRNA downstream 490116 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 490431 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 554455 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 554455 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 554455 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 354584 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 354584 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 498269 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1015836 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1441647 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 466708 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 830038 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2745856 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3354075 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3506179 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile