RNA id: TU424415


Basic Information

Item Value
RNA id TU424415
length 418
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G373293
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17245385 ~ 17245802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattatttagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaagcaGCTCGAGctaagtgaggttggatggagagcatttgtgaacagcagttttcagttcttttcacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424248 lncRNA upstream 7980 17236769 ~ 17237405 (+) True G373157
TU424234 lncRNA upstream 15105 17172353 ~ 17230280 (+) True G373144
TU424233 lncRNA upstream 73768 17171400 ~ 17171617 (+) True G373143
TU424227 lncRNA upstream 83327 17161620 ~ 17162058 (+) True G373137
TU424225 lncRNA upstream 83892 17161267 ~ 17161493 (+) True G373135
TU424416 lncRNA downstream 110 17245912 ~ 17246427 (+) True G373294
TU424439 lncRNA downstream 19364 17265166 ~ 17265396 (+) True G373317
TU424476 lncRNA downstream 44733 17290535 ~ 17290797 (+) True G373353
TU424487 lncRNA downstream 53161 17298963 ~ 17299314 (+) True G373364
TU424510 lncRNA downstream 83803 17329605 ~ 17329776 (+) True G373387
XM_036976967.1 mRNA upstream 2474 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 2474 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 28199 17191416 ~ 17217186 (+) False LOC110523352
XM_021601977.2 mRNA upstream 28199 17191416 ~ 17217186 (+) False LOC110523352
XM_036976965.1 mRNA upstream 28199 17191416 ~ 17217186 (+) True LOC110523352
XR_005051669.1 mRNA downstream 481719 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 482034 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 546058 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 546058 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 546058 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 363200 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 363200 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 506885 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1024452 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1450263 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 458311 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 821641 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2737459 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3345678 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3497782 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile