RNA id: TU424535


Basic Information

Item Value
RNA id TU424535
length 262
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G373412
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17340097 ~ 17340358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcacaatagaacatattttgcatcttcaaagtggtagtcaTGCTGTGTAAATCCCAAAATCTAATGTATttacaggttgtaaggcaacacattaggaaaaatgccaagggggggtgtatactttcgcaagccaatgTATATAACTTTTTAAATTGTATCAACTTCCACAAAAACACTTTTAAGGAGCTAAAGCAAGCCCCACAACTTTACTTCATGTACAGTCAGTGAGGAAAAAGGCAAGGTGTTGAAAAGGAGGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424510 lncRNA upstream 10321 17329605 ~ 17329776 (+) True G373387
TU424487 lncRNA upstream 40783 17298963 ~ 17299314 (+) True G373364
TU424476 lncRNA upstream 49300 17290535 ~ 17290797 (+) True G373353
TU424439 lncRNA upstream 74701 17265166 ~ 17265396 (+) True G373317
TU424416 lncRNA upstream 93670 17245912 ~ 17246427 (+) True G373294
TU424547 lncRNA downstream 7287 17347645 ~ 17347862 (+) True G373424
TU424562 lncRNA downstream 23264 17363622 ~ 17365608 (+) False G373435
TU424558 lncRNA downstream 24135 17364493 ~ 17367115 (+) True G373435
TU424566 lncRNA downstream 27260 17367618 ~ 17367937 (+) True G373438
TU424627 lncRNA downstream 72756 17413114 ~ 17413333 (+) True G373499
XM_036976967.1 mRNA upstream 97186 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 97186 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 122911 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 387163 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 387478 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 451502 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 451502 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 451502 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 457912 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 457912 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 601597 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1119164 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1544975 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 363755 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 727085 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2642903 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3251122 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3403226 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile