RNA id: TU424562


Basic Information

Item Value
RNA id TU424562
length 479
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G373435
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17363622 ~ 17367115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcactatgtctatcaaactgcatgcagtgtatgggtaaacacttttagggtgatttgaaccacttccggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaattttgtggtgcaggcaatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaacactgttttactgtgaagggttaatgccacacggtcaaggttaggcttgttcagatcgggaggaccttaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424547 lncRNA upstream 15760 17347645 ~ 17347862 (+) True G373424
TU424535 lncRNA upstream 23264 17340097 ~ 17340358 (+) True G373412
TU424510 lncRNA upstream 33846 17329605 ~ 17329776 (+) True G373387
TU424487 lncRNA upstream 64308 17298963 ~ 17299314 (+) True G373364
TU424476 lncRNA upstream 72825 17290535 ~ 17290797 (+) True G373353
TU424566 lncRNA downstream 2010 17367618 ~ 17367937 (+) True G373438
TU424627 lncRNA downstream 47506 17413114 ~ 17413333 (+) True G373499
TU424634 lncRNA downstream 54879 17420487 ~ 17427479 (+) True G373506
TU424645 lncRNA downstream 73613 17439221 ~ 17439730 (+) True G373517
TU424686 lncRNA downstream 118097 17483705 ~ 17487049 (+) False G373542
XM_036976967.1 mRNA upstream 120711 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 120711 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 146436 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 361913 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 362228 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 426252 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 426252 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 426252 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 481437 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 481437 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 625122 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1142689 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1568500 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 338505 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 701835 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2617653 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3225872 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3377976 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile