RNA id: TU424627


Basic Information

Item Value
RNA id TU424627
length 220
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G373499
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17413114 ~ 17413333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTTCTGTTGTGCCAGGGAATGTATagctttacctttatttaactagccaagtcagttaagaacacattcttacttacaatgaaaGCCTAccaactaccttgttcaggggtagaacgacagatttgtaccttgtcagctcagggatttgatctagcaacctttttctctaaccactaggctacctgagcTTTGCTTTATGAATTTCCAATGCAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424566 lncRNA upstream 45177 17367618 ~ 17367937 (+) True G373438
TU424558 lncRNA upstream 45999 17364493 ~ 17367115 (+) True G373435
TU424562 lncRNA upstream 47506 17363622 ~ 17365608 (+) False G373435
TU424547 lncRNA upstream 65252 17347645 ~ 17347862 (+) True G373424
TU424535 lncRNA upstream 72756 17340097 ~ 17340358 (+) True G373412
TU424634 lncRNA downstream 7154 17420487 ~ 17427479 (+) True G373506
TU424645 lncRNA downstream 25888 17439221 ~ 17439730 (+) True G373517
TU424686 lncRNA downstream 70372 17483705 ~ 17487049 (+) False G373542
TU424688 lncRNA downstream 70372 17483705 ~ 17487049 (+) True G373542
TU424779 lncRNA downstream 130051 17543384 ~ 17543713 (+) True G373625
XM_036976967.1 mRNA upstream 170203 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 170203 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 195928 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 314188 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 314503 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 378527 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 378527 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 378527 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 530929 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 530929 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 674614 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1192181 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1617992 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 290780 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 654110 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2569928 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3178147 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3330251 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile