RNA id: TCONS_00033295


Basic Information

Item Value
RNA id TCONS_00033295
length 275
lncRNA type intronic
GC content 0.45
exon number 1
gene id XLOC_015783
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42013076 ~ 42013350 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccagtctgaggtcaagagcactctgaaacaggttttcattaaggatgtctgtacattgctgcattcatctttccctctatcctgactagtcttctagttactgctgctgaaaaacatcctccTACAGCATGATGCGGTGCccggttttctccaaacataacgcctggcattcactcaaaAGAGTTCAATTTCAGTCTCATCAGGCcaaagaattttgtttcttatggtctgagagtccttcagatgccttttggcaaattccaggcggggagtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031384 lncRNA upstream 130916 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 217507 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 241035 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033636 lncRNA upstream 430047 41578128 ~ 41583029 (+) False XLOC_015778
TCONS_00031392 lncRNA downstream 163572 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033638 lncRNA downstream 397538 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 406453 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 603511 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 632038 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031387 mRNA upstream 4322 42005475 ~ 42008754 (+) True XLOC_015782
TCONS_00031385 mRNA upstream 79057 41926707 ~ 41934019 (+) True XLOC_015781
TCONS_00031383 mRNA upstream 92444 41876595 ~ 41920632 (+) False XLOC_015780
TCONS_00031380 mRNA upstream 469314 41524238 ~ 41543762 (+) False XLOC_015777
TCONS_00031382 mRNA upstream 471033 41526904 ~ 41542043 (+) True XLOC_015777
TCONS_00031388 mRNA downstream 58881 42072231 ~ 42081472 (+) False XLOC_015784
TCONS_00031389 mRNA downstream 59339 42072689 ~ 42083513 (+) True XLOC_015784
TCONS_00031390 mRNA downstream 99153 42112503 ~ 42114036 (+) True XLOC_015785
TCONS_00031391 mRNA downstream 122369 42135719 ~ 42152135 (+) True XLOC_015786
TCONS_00031393 mRNA downstream 163763 42177113 ~ 42187118 (+) True XLOC_015787
TCONS_00031377 other upstream 976885 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 1956060 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4134772 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4176156 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 4811489 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 410334 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 573388 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 985452 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 1266251 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2339323 44352673 ~ 44353567 (+) False XLOC_015820

Expression Profile

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