RNA id: TU424645


Basic Information

Item Value
RNA id TU424645
length 510
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G373517
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17439221 ~ 17439730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgttattctgcacaccactaactctacctgttgttcttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttgttcttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttgttcttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttgttcttattctgcacaccactaactctacctgttgttgttattctgcacaccactatctctacctgttgttgttattctgcacaccactaactctacctgttgttgttattctgcacaccactaactctacctgttATTATTATTTTGCACACCACTAtctctacctgttgttgttattctgcacaccactaactctacctgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424634 lncRNA upstream 11742 17420487 ~ 17427479 (+) True G373506
TU424627 lncRNA upstream 25888 17413114 ~ 17413333 (+) True G373499
TU424566 lncRNA upstream 71284 17367618 ~ 17367937 (+) True G373438
TU424558 lncRNA upstream 72106 17364493 ~ 17367115 (+) True G373435
TU424562 lncRNA upstream 73613 17363622 ~ 17365608 (+) False G373435
TU424686 lncRNA downstream 43975 17483705 ~ 17487049 (+) False G373542
TU424688 lncRNA downstream 43975 17483705 ~ 17487049 (+) True G373542
TU424779 lncRNA downstream 103654 17543384 ~ 17543713 (+) True G373625
TU424798 lncRNA downstream 115857 17555587 ~ 17556039 (+) True G373644
TU424828 lncRNA downstream 141237 17580967 ~ 17581198 (+) True G373674
XM_036976967.1 mRNA upstream 196310 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 196310 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 222035 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 287791 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 288106 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 352130 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 352130 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 352130 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 557036 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 557036 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 700721 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1218288 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1644099 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 264383 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 627713 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2543531 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3151750 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3303854 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile