RNA id: TU424849


Basic Information

Item Value
RNA id TU424849
length 3414
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G373691
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17598923 ~ 17602356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTGCTGTCAATATGCATGTCATTTGAAAAATATGCCAAATAACTCACTTTAAGTAACATACTCATTCAAAAATAGTCTATACCAATTATTAATGAAATACCATAAATCTTACAGGTATTCATTTATCTTAAAGTATAGTTTTATTGCTTGGATATTTTGTTCTACGTTTTACAATAAACTGACACTTGTATCTCAGTGCTTGTGCTTGTTAAATATGAACCATGTTTGTAGATAAAGATTCTCAAATGTGTCAACTTTATTAAAAAGAAAAGTTGATCAAATTAGCCCCCAATGAATCAACACATTTTACAGCAAAAACATGGACTAATCCTAAACTTAGAAACCTAGAAAATGAATATGCTGTCAAGATATACAGACAACTAACATTTGCCCCAGGACAGATCAAGATGGGAGCTGGCATATTTGGGATAGAAAACATGACATCAATAGGGACCATGATTAAGAGTGTACCATCATTTTGACATTCATCACAGTTCTATCATACTTCAGATACACTTACAATACAATATTGTTTTTGACATTATACCACGCAAGATTACAAATATAATTGTATTATATTAACGCTGCAGTATATTAGCTTTCATACACTCCTGTAAGAGTAGCATGAAGATAACAGCATAGATAAGAATCACAGTGAGTTTTGATTCATCTCATTTAATTGGCTGAGATGAATGCTTGAAGATGTTACAATTTAAATAATTTACAAACCCAGTAATCAATAAGACCACATAACCAAAAGCTCTATCTTCAAGCCACTTAGAAACTGCAATTAGTCCAAATGCAGTAAATAATTTAAGCCTACATTTCTACAAGGGCTGCAATGCATCTGTGAGAGCTGGCAACCGAGAAAGCTGGCAACCGAGAAAGCTGGCTGGTGGAGGAGATTAAATGTTGAATGGTTGTGAATGAATATTTGGTCATGGAACTTTGAAAAGCTGTACACTATATGCAACATTAGTTCTTGCAGAAATGCAAGACAAGTAACTTCAATATTGCATTGTCTCACTGATTCTTCAATGATATCGTAGATCATAATATTATTTAATATCCTTAAAAAACACTTACTAAATGATCACTTCATTAAAAAAGGTAATAATAAAAATGTTGCCCCACAGACAACTGGAAAAATTGTCATattgtaaatacatgtaattatTATTTCACTTAATCTCTCAGCGATATAATATGCGTCACTGTTATTGcatttatttaaatgtgatacAAATAAAAATCTCGAATTAATTAGTTACAGAGCAAAAGAAACTCAGAAAATGATAAGGTAGAGATCCTGTGCTGTGCCCTTTCATGCAAATAATTCAGTATTAATGATGACAAATCATTACATAATAATAATGGGTTCATCATACTGTACTTATAATGCCTGGCACCTACAGTACATTAATTAAGTCAAAGAGGTAGAGCTACAAATaagtatatttatatatttcaatCCCTACTACAGATAATCGTAGTTGGTGTCCTCCTGTCTCTTATTAAGCCGATAGGAACAACAGACGAGGGTTAATTCCACAAATTCAATTATAATTCCAGGTCAGTCGTTGAATTAAGAGATAATTAATTTCCTCTGAATTCCAATGTTAGGTCAATTAAAATATTTTAATTCCCAATTGAAATGATCCCCAACAATTCCCTCAGGCTTTAAGGCTGATGTCAGTGTTCAGATAGCCAAGTTATActagaaatatagaaatacaagTTTAAATGATTTAAAACAAATCCTGCAGTCGATTTGACACTTTTTGCATTAATTATATTACCTGGgaaatatacaaatattgaaTTGCAATTCAATTCAAAAAACATTTTCTTTTCAATTCCAATTCAAACAGTAtaattccaattcaattccaaAACTTTAAAATTCTTTAAATTAGAATGTAATTCAGTCAGAAATTCTCCACTTCATGAGTGATTTCAAGAATTGAATTAGAAATTCTAATGACATTGCAATTGACCTCAACCCTGCAACAAACATAACTAATAGAACAGACCAATCAGAAAAGTTTATCAGTTTCATACACACTGGGAAGGAAAATAGCCAAACCAACATTTTGGTTCAAgagcaaaaaatatttagcatatATAAATACGACAATACAGGTGTGAAGGACAGAAACACATGAAATCCAAAAAGGACACTATGATGATGGACAGTTGAACATGAAATGATAATGGGATTTTTAAGTTTGATCTGTTCTGGCAGGCATAGAATAGGACAGTCAAGTCCAACTTCACAGCTCCATAAGAGTTGCATAATAAAGTGTGTTGTACTTAATTACCTAACAGGCATGAATTATGAATACATGAAGCATTGTATTAGTTTAAATGCTTTATAAATCATTAATACCATACCCATGAATAAGCAATGAATGGCTTCCAAAGAACTTCAACGTTTTCCTTGGTGTAGAGCATGACCTCTACAGCAAATTAAGGATTTTCAAATGCAACCCCTACCCCTCTCATACAAACACTTACATCTCCCCGTTTCACAAGGCTCCCTCCTATACTTCTCTTCTCAAAACAAAGAATTCTGTCAGTTATCTTAAATTAAAAATATGTACTTCAGCAGGACATTTAAAAGAGAATTATAAAACAGTGCTACAGTATAAATGAGGCTGCTGTAGGGGTCTTTGTTTACATCCAACATGGCATCTCATTCcttacatagggctctggtcaaaagtagtgcactaagaggacaagagtagtgcactatatagggaatagggtgcaatttcagATGCACTTTGTGCTGTGTTGATTAGTGCTGGTTTTGTTGGGTTGTTTGTGTTAGACTAGAGGGACATTTCAGATCCCAGAGACTAGTTTTTCCAGAAGAAACCGTTGTCTTCTGGCTCCAGGTCGATTCTAATCTGAGGCACAGCTTTTTTTCAATAGATTCAGactgagagatagaaagagaggagagggataaagagcgagagagtgagagagagaggagacagagagaaggtagagagattGAACAACCATGACACGCTATACTCTGACTGATTGTCACACTATATAAATCTGTGGGTGTCTGGGGGTATAGAATAAGTCACACAGGCTCGCTCACACAGATACCTTGCTACAGTAGTGGGCTCAAAGTAGTCCTCAACATGGTGAGTGTTGGTCACGGAAAGACGACGGGGGTCCTAAAAGagaagacaaaacacacacaacattaaCAAGTTTCAGCCACTTAAATATTCACTCTCAAAATATCATCATAATTCAGACCAGGTCCAGCAAAAGAGGAACATTTGAGCAAGCGTTGCAAAGCCATGATGTTTCACAGTAGAAGCAGCTGTTAATTAAGCATTTGTAAGCAGCTGTTAATTAAGCATTTATAAGCAGCTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424828 lncRNA upstream 17725 17580967 ~ 17581198 (+) True G373674
TU424798 lncRNA upstream 42884 17555587 ~ 17556039 (+) True G373644
TU424779 lncRNA upstream 55210 17543384 ~ 17543713 (+) True G373625
TU424686 lncRNA upstream 111874 17483705 ~ 17487049 (+) False G373542
TU424901 lncRNA downstream 41689 17644045 ~ 17645733 (+) True G373732
TU424887 lncRNA downstream 112296 17714652 ~ 17717041 (+) True G373725
TU424894 lncRNA downstream 114959 17717315 ~ 17718267 (+) True G373730
TU424891 lncRNA downstream 116477 17718833 ~ 17722409 (+) True G373727
TU424946 lncRNA downstream 123889 17726245 ~ 17726487 (+) True G373774
XM_036976967.1 mRNA upstream 356012 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 356012 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 381737 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 125165 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 125480 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 189504 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 189504 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 189504 17791860 ~ 17871592 (+) False LOC110523357
TU423600 other upstream 716738 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 716738 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 860423 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1377990 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1803801 15791559 ~ 15795122 (+) False G371615
TU424889 other downstream 101757 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 465087 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2380905 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2989124 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3141228 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile