RNA id: TCONS_00031389


Basic Information

Item Value
RNA id TCONS_00031389
length 3654
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_015784
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42072231 ~ 42083513 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGATAGGCGCATTTTATGCGGGATGTGCCCGGACCCGCAGTGCCAGGCGAAGCTCATCTTCCCCGCACACACCTCCATGAGCATCGAGTGCACCGAGTGCGGACAGAGACACGAGCAGAAGAATCTCGCCAATGTGGAGGAAGTGACTAACCCTGATGTAGTGCTTCATAATTTGCTGAGAAATGCTTTGCTGGGTGTGCCAGGCCCTCCCAAGAAGGGCTCAGAGCTGGTGAAAGTGATGGGACTGTCCAACTACCACTGCAAGCTGCTGTCACCCATCCTCACCCGCTATGGCATGGACAAACAGACAGGCACTGCCAAACTCTTGAAGGAAATGAATCAGGGAGACATCTTTGACTGCTCGCTGCTTGGGGACCGTGCATTTCTCATCGAGCAAGAGCATGTGTCCACTGTTGGGTATGGACGGGACCGGTCAGGGAGCTTGATCTACTTGCATGACACTTTGGAGGAGATCAAGAAAGCGAACGGTAATAGAGAGTGTCTTATTCCTGTGCATGTGGACGGAGATGGACACTGCCTGGTCCACGCCGTGTCCAGGGCGTTAGTTGGGCGCGAGCTTTTCTGGCACGCTCTTCGGGAAAACCTTAAACTCCATTTCAAGCAGAACCTCGACCGCTACAAAGCTCTTTTCCAGGACTTCATAGATGCTGCAGAATGGGAAGACATCATCAATGAGTGTGACCCGTTGTTTGTCCCTCCAGAAGGCGTTCCACTGGGCCTGCGTAACATTCACATATTTGGCCTGGCCAATGTACTTCACAGACCTGTAATCCTTTTGGACTCGCTGAGCGGTATGCGAAGCTCCGGTGATTACTCCGCCACTTTCCTACCAGGCCTTATTCCAGAGGAGCAATGCCGAGGGAAAGACGGCACTCTGAACAAGCCCATCTGCATCGCCTGGAGCAGCTCTGGCAGAAATCACTATCTGCCTCTTGTGGGCATCAAGGGCTTGGCTTTGCCCCGTTTGCCTGCTGCACTGCTTCCCAAAGCGTGGGGTGTTCCTCAGGAGCTCATCCGCAAGTATGTGAGTTTGGATCCCAGCGGGAGCTGTGTGATTGGGGGCGACCGGAGCCTCCAGGATAAGTACCTCCTGCGCCTCGTAAGCGCCATGGAGGATGTCTTTATGGACAAGCACAGCATCCATCCCGCTCTAGTAGCCGACGTCCATCAGTACATATACCGACGCACTGGAGTGATCGGCGTACAGCCGGAGGAGGTGACGGAAGCGGCCAAGAAATCCATCCAGGAAGGCCGCCTCCACCGCTGCCTGGTCTGCAACGCTCTTTCAGAGCTCCACGTACCAGCCGAATGGCTCATACCTGGAGGGAAACTCTACAACTTGGCCAAATCAACTCACGGGACGCTCCGAGCAGACAAGAACTACAGTTTCCCATTAAATAGTTTAGTTTGTTCCTACAACCCAGAAAAAGATGTGCTCGTGCCTGATTATAAACTCAGCTCGCTCACAACCTGCACCTGGTGTCATGGGACCTCAGTACGCAGAGTTCGGGGTGACGGCTCTGTGGTGTATTTGGACGGGGACCGCACTAACACTCCCTCTCAAGGTGGCAAGTGCGGATGTGGGTTCAAACACTTCTGGGAAGGAAAGGAGTACGACAATCTTCCCGAAGCCTTCCCGATCACTCTGGAGTGGGCTGGCCGTGTAGTCCGAGAAACTGTTTATTGGTTCCAGTACGAAATTGATCCAACTCTCAATAGTAATGTATACGATGTGACCATGCGTCTCGTCACAAAGCACTTCCCTGGTGAATTCGGCAGCGAAATCCTAGTCCAGAAGGTAGTGAACACCATCTTGCATCACACCGCAAAGAAGAGCCAAGATGAATACAACCCAGTTGCCATCGAAGGTGCTCACGTGCAAAATAAAGTAGACGGAGGTGAATCTTCTGCTCACCCTCCGACTAAAATCATCCTGACGGGACAGAAGGGAAAAACTCTCCATAAGGAGGAGCTGGTCATGAGCAAAACCGAGAGGGTGTTGCAGCACAGCATCAGCGAGCAGGCTGCCCTCTCCCAGCGCCGCAGCACAGATCGCGTGCGCCATCAGGACCCTCGCCCATCATCTCcttcctcttcatcatcctccGCTCCTCCCACTCCCACCAAAGTACCCCCAACCAGCGGAGAGAAGAAGATCCGTGTAACCACCAGCGACGGGAGGCAGGCCATGCTTACTCTGCAGCCGCACACTACCTACAGTGATCTCCAGAACTCAATCATCCAGGTCTTCAACTTGTCGCCCGGACAGCTGTGCATTCGTCATGGGTTCCCGCCCAGAGAGCTGCCTCCACCACCTCCCGAAGACCAGAACCGGCCCGTGGCGCTTCAGCATGGAGATCGGATTTCTGTGGAGGTGCTGAAGGAGAGCTCTGCGGATCCTCAAGTaacccaaacacacactcacagcccTCAAACACACGCTCACTCCGACCCACGCCTCAGCCACAGCAGTAGCAGGGAACTTCAGGACAACATTGACCTTGAGATGTCATCACTGTGTCTCCTGGCAGCACTCATGGgtgaAGATGTCTGGTCATATGCCAAGAAACTGCCTCACCTGTTCCAGCAAGGAGGAGTCTTCTACAATATTGTGAAGAAAGACATGGGTCTCCTGGACGGGAAGCACTGCACACTGCCCCACTTGTCGGGTAAGACGTTTGTGTTCAATGCAACCGAGGAGCGTTTGGAGCTGTGTGTGGACACAGCCGGGCATTTTCCAGTGGGCCCGGATGTGGAGGAGCTCGTCCAGGAGGCCCTTTCACAGCTCCGCTCAGACGCAGCGTCTCGTAGCCGCGAGGGAAGTCCCGCACACAGTTTGCGTCTGGGCTCCGGTGGTGCCGTACGCAAGAAGGAGCAGAACATCACTGCCTTCCAAGGTAAAGGGCACTCATTAGGTTCGGCCCCTCCTGAACATCCACCAATCAGGCGGCAGCACAGCAGCGGCGTTGACCTCAGCGGCAGTGCCCGCGGAGAAGGGTTAACGTTGTCAGGGGAAGATTTAGTGCGTGTAGCTCCAGGCATGCTTACTTTACGTGAGGGCCGCGGGATGGGGCTGGAGCCCGCTGTGATTGAGGCCCAGCGTCAGCGCTTGCAGGAGATGGTATCTAACATACAGGCGTCAATGGACAAACATTTGCGCCAGCACACTGCAGCAAGGAATGATGGGAAGGAAGAAGAGACTCCTGACAAACCGGAGGAGATGGAGAGTCACGGGCCGGAGCCTCCCAACACCTTTGAACCGATGGACCAATCCTGATGCTTCATATACCCTCACAGCAGAGATTCTGGCCTATGGAACAAACCTGGTGTCGTCTCAGTGATACAGTTGTCTTTGGCACTTCTCCACATTGTACTACCCATTGCTGTCTTATCCAAAGAACACTACACGGTAAAAGTCCTGAAATAAAATCACCTAAACATCTCACTTCACAGTCAGAGCTCAGAAAACCTCTCTCAGCGAATCGGCATGGAGTGTGTGTCCATCTGAGCGCCAGTTTCTGTTGTGTAATCTCAGATTGGCCTTTGAACTCTTATCAGCCTTGCCTTCAATGCAGTTGTTCAGGCTCATCGGTTTTTGGTTTCGTTGtgtccttttttttctttgcatgtc

Function

GO:

id name namespace
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0035871 protein K11-linked deubiquitination biological_process
GO:0016567 protein ubiquitination biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0090168 Golgi reassembly biological_process
GO:0016320 endoplasmic reticulum membrane fusion biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070912-613 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human VCPIP1 (valosin containing protein interacting protein 1).

Ensembl:

ensembl_id ENSDART00000134203

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033295 lncRNA upstream 59339 42013076 ~ 42013350 (+) True XLOC_015783
TCONS_00031384 lncRNA upstream 190529 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 277120 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 300648 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033634 lncRNA upstream 489660 41578128 ~ 41583029 (+) True XLOC_015778
TCONS_00031392 lncRNA downstream 93409 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033638 lncRNA downstream 327375 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 336290 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 533348 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 561875 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031386 mRNA upstream 55407 42005217 ~ 42017282 (+) False XLOC_015782
TCONS_00031387 mRNA upstream 63935 42005475 ~ 42008754 (+) True XLOC_015782
TCONS_00031385 mRNA upstream 138670 41926707 ~ 41934019 (+) True XLOC_015781
TCONS_00031383 mRNA upstream 152057 41876595 ~ 41920632 (+) False XLOC_015780
TCONS_00031380 mRNA upstream 528927 41524238 ~ 41543762 (+) False XLOC_015777
TCONS_00031390 mRNA downstream 28990 42112503 ~ 42114036 (+) True XLOC_015785
TCONS_00031391 mRNA downstream 52206 42135719 ~ 42152135 (+) True XLOC_015786
TCONS_00031393 mRNA downstream 93600 42177113 ~ 42187118 (+) True XLOC_015787
TCONS_00031394 mRNA downstream 108079 42191592 ~ 42198600 (+) True XLOC_015788
TCONS_00031395 mRNA downstream 116877 42200390 ~ 42210526 (+) True XLOC_015789
TCONS_00031377 other upstream 1036498 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2015673 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4194385 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4235769 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 4871102 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 340171 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 503225 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 915289 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 1196088 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2269160 44352673 ~ 44353567 (+) False XLOC_015820

Expression Profile

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