RNA id: TU424887


Basic Information

Item Value
RNA id TU424887
length 2159
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G373725
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17714652 ~ 17717041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCAAAGAACACATTTATTTCCATCATAAACAGCATTCAGTATTGTACAGTTCAGTAACTTTCATCACCCTTAGCCAATTCATATTTACAACTCAGTCATCAGAATATACTCTTACAGCAAGGGGAATATACAGACAGGGGACCAAATTTAGCATGTGATGAACAAGCATTTTCTTGTTCTCAGAGAAGCATGGCAGATGGCTTTGTTACTTTACCACCTTCTGATCAACACAATCATGTTCATTTTCTAAAGCTGTGTCAAAATAACACATTGATATAAGTAAGAAGGAAATATGACATGGTGTAAAAGGGGGAAAAGAAACAACCTCTAAAAAGAGACCTAATAACATTCTTTAATATAGACTTTCCAGCTACCAAAATATGATATCAAAGCAAAATCCTGTCATTGTTGTATTTACAGTATGGATTTCATAGCAGAAGTTAGTTGTATCTCCATATCAAATCTTCCTGAAAAGATAGTATAAAATGGCATTTAAATATATTCCATTGTACTCATGTCTTACTGCATACTATAGTAGTAGGTCTATAGTTAAGTCCTATAACAGCAACGTGTCTCTGTACCAATATCTATCACTTTAAAACACCACTACCTctgaataacacacacagaaagaaaagCATTTGCTCCCATCTGTATGAATGGAAAATAGTAAATTGTTTATACTTTGAAGAGTGGCATGACCATTATTGCATAGTAAACATTTTCATTTTGGATTCCATCCCTTTGCAGCACAGCAATACATTACTCAACAGAACTTACAAAAAGGCATAGGAAATCACACTATTGAAAGAAGCATACGCTGATAGCACTGAATGTGCTGTTATAGTTTACTACGTGGCTCATCACTTTAGTAACATTATATGGGAAAATAATGCAACAGAGCCTAAATGACGTAGTTCAGTAGTTTCTAAAAGAGACAGCATATTTGCCGTAAAGGAAAAACATTCAGGCAAAGAGGTCAGGAAACTGTTCAAAGTGCTTCATGGCTGGTAAGAAAGGGCAAGGGAACACCCCATCTTTGTTTATAAAAGTACAGTAACTATGGTAGCCtgagtaccagtctgtttgtgctatcatgccaaCTCTCGGTCACTGATTGTCATGCCGAACCTGTTTGActtgacaatgacagcaatggagaaggcaagagcacaaacagatctgggacaaggCAATAACTATGGTGCTCTTGGCCCCAAAGACAATATTTTacttgtatactgtatgtggccCATCAAATACAGCTTTTGCCATTACTGGTATTGTAACAGTTTAAACTACTGTAGTCGTATCTAGACCTGACTTGAAAACAGACTAAAAAAAAATGACCATATGTTGAGGCAACTTAAAACATGGACCCAAACCTCAGATCTAAATTTCTCCATTCATATTAAAGATTCTCTTTTATAGCTACATAAAAGTAACACTACAATGGGAATCTCAGAAAGCCAGTGAGGGCAAATATTCCCTTTGTAGCCACGAGAATGTTGTGCACTTCTTTTGTTGTTCTGTGGGAGAGTGAGTTATGTGAACTCTATTGGGGTTTTGGTTAGCCCACAAGCCATTTAATCCTGTCATCTTATTATACCAAGACTAGGCAATGGGGTCATTTCTTCAACCTAATGTAAGGAGTTTTGTTGCAGTTATCACCAATGTGACCAATATGCTAAAATATTTGTACAATAATTATGTGGTCCTTTATTTCTTACATAGCCTCTATGTATGAAGGTGCCAACTATAGTGGTAGGTTTTGTAGAAGCATCTGATAAATATACACCAAATAGAGGAAGCTAATAAATACCAGTGATTTCAGTTTTGGGGATCGGTCCAAATTAATGCAACCATAATGAGCACATACCAGCTCAGACAGTAGTATAGTATTCCCTCATAGTCTAACCCCATTGCCTATGACAGTGTAAGACTCTTCCTTACTTACCTGGCTTTCTTGAGAACATTTCCCCAAAGTTAGCGTATGCTGTATACACATAGCCAGTGCAGGGCAGGGTAGAAGGGACATCTGTGCAAAAATAATAGTAGACTACCATAGAGTTAAAAGGATAAGTCAGTCTGGGTTTATCGGTCCTTGGTGGTCAGTTTATCAATCAGCTCCTGGAGAGGCACCAACTCCTTCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424901 lncRNA upstream 68919 17644045 ~ 17645733 (+) True G373732
TU424849 lncRNA upstream 112296 17598923 ~ 17602356 (+) False G373691
TU424848 lncRNA upstream 112770 17598923 ~ 17601882 (+) False G373691
TU424850 lncRNA upstream 114614 17598923 ~ 17600038 (+) True G373691
TU424828 lncRNA upstream 133454 17580967 ~ 17581198 (+) True G373674
TU424894 lncRNA downstream 274 17717315 ~ 17718267 (+) True G373730
TU424891 lncRNA downstream 1792 17718833 ~ 17722409 (+) True G373727
TU424946 lncRNA downstream 9204 17726245 ~ 17726487 (+) True G373774
TU424947 lncRNA downstream 9531 17726572 ~ 17726779 (+) True G373775
TU424958 lncRNA downstream 38099 17755140 ~ 17755583 (+) True G373786
XM_036976967.1 mRNA upstream 471741 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 471741 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 497466 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 10480 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 10795 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 74819 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 74819 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 74819 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 6895 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 832467 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 832467 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 976152 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1493719 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 350402 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2266220 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2874439 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3026543 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3114217 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile