RNA id: TU424947


Basic Information

Item Value
RNA id TU424947
length 208
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G373775
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17726572 ~ 17726779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttacgttgcaaacttcccttgcttggctaatcatttgaaCCGACGACAAATATGGCcgcggggattcccccaagggtatagggctgagggtttagggccgagggctgtctactttgagtttgaaacgcagccctggtcagtctatgtcatggaaagagcaggtgtttatAAAGTTCTATATACTCAGTATAGATGTTATCGCAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424946 lncRNA upstream 85 17726245 ~ 17726487 (+) True G373774
TU424891 lncRNA upstream 4163 17718833 ~ 17722409 (+) True G373727
TU424894 lncRNA upstream 8305 17717315 ~ 17718267 (+) True G373730
TU424887 lncRNA upstream 9531 17714652 ~ 17717041 (+) True G373725
TU424901 lncRNA upstream 80839 17644045 ~ 17645733 (+) True G373732
TU424958 lncRNA downstream 28361 17755140 ~ 17755583 (+) True G373786
TU424960 lncRNA downstream 37923 17764702 ~ 17765457 (+) True G373788
TU424885 lncRNA downstream 49435 17776214 ~ 17778203 (+) True tnpo1
TU424973 lncRNA downstream 52129 17778908 ~ 17779961 (+) False G373790
TU424968 lncRNA downstream 52504 17779283 ~ 17779887 (+) False G373790
XM_036976967.1 mRNA upstream 483661 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 483661 17235815 ~ 17242911 (+) True LOC110523353
XM_021601976.2 mRNA upstream 509386 17191416 ~ 17217186 (+) False LOC110523352
XR_005051669.1 mRNA downstream 742 17727521 ~ 17775607 (+) False tnpo1
XM_036976968.1 mRNA downstream 1057 17727836 ~ 17778710 (+) False tnpo1
XM_036976969.1 mRNA downstream 65081 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 65081 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 65081 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 18815 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 844387 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 844387 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 988072 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1505639 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 340664 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2256482 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2864701 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3016805 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3104479 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile