RNA id: TCONS_00031390



Basic Information


Item Value
RNA id TCONS_00031390
length 690
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_015785
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42112503 ~ 42114036 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGACAGCAGACTCTCACCGACAATTGGTTTCTGGAGGACACCGACTGAGATTACCGTGAATTCCCCTATGAATCTGCACGTGGTTGTCGTTGCGGTGTCCCTCGGACTCTCCGTCTGGAGCTCTGACTGCGCTCCTGGACACACGGACGCGCCGCTGCCGGTCCTGATGCGCGTAGGGGAGGAGTACCGGATACGCCTGGACAACAGCCCGAGCGCGCTCGACCGGAAAGCTCCGTCGCGCATTCAGCTGCAACTCACACAGCGGCTGTCTGGAGGTCAGATCGGTGGTGTCGGTAACGGGATCCTGAGCAGCCCAGAGGACCGCGAGCGTCGATCGGAGGATCCGCCGATCTCGCTTGATCTGACGTTTCACCTGCTGCGTGAGGTGCTGCAGATGGCGAGAGCCGAGAAAATGACCCAGCGCGTAACCCACAACCGCAAGATCATGGACGATTTAGGAAAATGAAGCATTAATAACTCACAAAATAGTTGTGTCAGCGTTCAGTGTAAAAAAGAAATAAGTATTACCACTTTAAGTCTACACTTTAAAAAACATAGGCTACTTCACATTACATTCactctaagaaatgctgggttatttaaacccaaactgagtgaaatatggacaaacccaaacattgggttaaataggCCTAAATTTGAtcctatatttaaaaaatgaacacaTCA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136022

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033295 lncRNA upstream 99153 42013076 ~ 42013350 (+) True XLOC_015783
TCONS_00031384 lncRNA upstream 230343 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 316934 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 340462 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033634 lncRNA upstream 529474 41578128 ~ 41583029 (+) True XLOC_015778
TCONS_00031392 lncRNA downstream 62886 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033638 lncRNA downstream 296852 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 305767 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 502825 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 531352 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031389 mRNA upstream 28990 42072689 ~ 42083513 (+) True XLOC_015784
TCONS_00031388 mRNA upstream 31031 42072231 ~ 42081472 (+) False XLOC_015784
TCONS_00031386 mRNA upstream 95221 42005217 ~ 42017282 (+) False XLOC_015782
TCONS_00031387 mRNA upstream 103749 42005475 ~ 42008754 (+) True XLOC_015782
TCONS_00031385 mRNA upstream 178484 41926707 ~ 41934019 (+) True XLOC_015781
TCONS_00031391 mRNA downstream 21683 42135719 ~ 42152135 (+) True XLOC_015786
TCONS_00031393 mRNA downstream 63077 42177113 ~ 42187118 (+) True XLOC_015787
TCONS_00031394 mRNA downstream 77556 42191592 ~ 42198600 (+) True XLOC_015788
TCONS_00031395 mRNA downstream 86354 42200390 ~ 42210526 (+) True XLOC_015789
TCONS_00031396 mRNA downstream 98912 42212948 ~ 42224703 (+) True XLOC_015790
TCONS_00031377 other upstream 1076312 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2055487 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4234199 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4275583 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 4910916 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 309648 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 472702 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 884766 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 1165565 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2238637 44352673 ~ 44353567 (+) False XLOC_015820

Expression Profile


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