RNA id: TU424973


Basic Information

Item Value
RNA id TU424973
length 1054
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G373790
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17778908 ~ 17780141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtacgtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggatgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424885 lncRNA upstream 705 17776214 ~ 17778203 (+) True tnpo1
TU424960 lncRNA upstream 13451 17764702 ~ 17765457 (+) True G373788
TU424958 lncRNA upstream 23325 17755140 ~ 17755583 (+) True G373786
TU424947 lncRNA upstream 52129 17726572 ~ 17726779 (+) True G373775
TU424946 lncRNA upstream 52421 17726245 ~ 17726487 (+) True G373774
TU424975 lncRNA downstream 6576 17786537 ~ 17786751 (+) True G373792
TU424979 lncRNA downstream 9171 17789132 ~ 17789428 (+) True G373796
TU424980 lncRNA downstream 9555 17789516 ~ 17789847 (+) True G373797
TU425029 lncRNA downstream 103389 17883350 ~ 17887537 (+) True G373833
TU425044 lncRNA downstream 132519 17912480 ~ 17954790 (+) False G373848
XM_036976968.1 mRNA upstream 198 17727836 ~ 17778710 (+) False tnpo1
XR_005051669.1 mRNA upstream 3301 17727521 ~ 17775607 (+) False tnpo1
XM_036976967.1 mRNA upstream 535997 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 535997 17235815 ~ 17242911 (+) True LOC110523353
XM_021601977.2 mRNA upstream 561722 17191416 ~ 17217186 (+) False LOC110523352
XM_036976969.1 mRNA downstream 11899 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 11899 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 11899 17791860 ~ 17871592 (+) False LOC110523357
XM_036976972.1 mRNA downstream 11899 17791860 ~ 17871592 (+) False LOC110523357
XM_036976973.1 mRNA downstream 11899 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 71151 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 896723 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 896723 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1040408 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1557975 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 287482 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2203300 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2811519 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2963623 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3051297 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile