RNA id: TU424975


Basic Information

Item Value
RNA id TU424975
length 215
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G373792
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17786537 ~ 17786751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatactgtggacctagttttgtcccatggattgtggatcttaatgttttccctcataatcctggactatcggaccaccattttattacgtttgcaatcgcaacaaataatctgctcagaccccaaccaaggagcatcaaaagtcgtgctataaattctcagacaacacaaagattccttgatgcccttccagactccctctgcctacccaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424971 lncRNA upstream 6396 17779388 ~ 17780141 (+) False G373790
TU424970 lncRNA upstream 6396 17779569 ~ 17780141 (+) True G373790
TU424973 lncRNA upstream 6576 17778908 ~ 17779961 (+) False G373790
TU424968 lncRNA upstream 6650 17779283 ~ 17779887 (+) False G373790
TU424967 lncRNA upstream 6650 17779388 ~ 17779887 (+) False G373790
TU424979 lncRNA downstream 2381 17789132 ~ 17789428 (+) True G373796
TU424980 lncRNA downstream 2765 17789516 ~ 17789847 (+) True G373797
TU425029 lncRNA downstream 96599 17883350 ~ 17887537 (+) True G373833
TU425044 lncRNA downstream 125729 17912480 ~ 17954790 (+) False G373848
TU425045 lncRNA downstream 161422 17948173 ~ 17954790 (+) True G373848
XM_036976968.1 mRNA upstream 7827 17727836 ~ 17778710 (+) False tnpo1
XR_005051669.1 mRNA upstream 10930 17727521 ~ 17775607 (+) False tnpo1
XM_036976967.1 mRNA upstream 543626 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 543626 17235815 ~ 17242911 (+) True LOC110523353
XM_036976965.1 mRNA upstream 569351 17191416 ~ 17217186 (+) True LOC110523352
XM_036976969.1 mRNA downstream 5109 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 5109 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 5109 17791860 ~ 17871592 (+) False LOC110523357
XM_036976972.1 mRNA downstream 5109 17791860 ~ 17871592 (+) False LOC110523357
XM_036976973.1 mRNA downstream 5109 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 78780 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 904352 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 904352 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1048037 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1565604 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 280692 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2196510 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2804729 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2956833 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3044507 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile