RNA id: TU424980


Basic Information

Item Value
RNA id TU424980
length 332
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G373797
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17789516 ~ 17789847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGTACGCTTGCCGTGCAgcaagcagagagaacagtctatgactagggtggctggagtctgaccatttttatggccttcctctgacaccgcctggtatagaggtcctggatggcaggaagcttggcctcagtgatgtactgggccgttcacactaccctctgtaatgccttgcggtcggaggcagagcagttgccataccaggcagtgatggaaccagtctcgatggtgcagctatagaaccttttgaggatctgacgacccataccaaatcttttcagtctcctgagggggaataggttttgtcgtaccctcttcaagactgtcttggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424979 lncRNA upstream 88 17789132 ~ 17789428 (+) True G373796
TU424975 lncRNA upstream 2765 17786537 ~ 17786751 (+) True G373792
TU424971 lncRNA upstream 9375 17779388 ~ 17780141 (+) False G373790
TU424970 lncRNA upstream 9375 17779569 ~ 17780141 (+) True G373790
TU424967 lncRNA upstream 9629 17779388 ~ 17779887 (+) False G373790
TU425029 lncRNA downstream 93503 17883350 ~ 17887537 (+) True G373833
TU425044 lncRNA downstream 122633 17912480 ~ 17954790 (+) False G373848
TU425045 lncRNA downstream 158326 17948173 ~ 17954790 (+) True G373848
TU425313 lncRNA downstream 212977 18002824 ~ 18003153 (+) True G374094
TU425314 lncRNA downstream 220265 18010112 ~ 18010381 (+) True G374095
XM_036976968.1 mRNA upstream 10806 17727836 ~ 17778710 (+) False tnpo1
XR_005051669.1 mRNA upstream 13909 17727521 ~ 17775607 (+) False tnpo1
XM_036976967.1 mRNA upstream 546605 17235812 ~ 17242911 (+) False LOC110523353
XM_036976966.1 mRNA upstream 546605 17235815 ~ 17242911 (+) True LOC110523353
XM_036976965.1 mRNA upstream 572330 17191416 ~ 17217186 (+) True LOC110523352
XM_036976969.1 mRNA downstream 2013 17791860 ~ 17871592 (+) False LOC110523357
XM_036976970.1 mRNA downstream 2013 17791860 ~ 17871592 (+) False LOC110523357
XM_036976971.1 mRNA downstream 2013 17791860 ~ 17871592 (+) False LOC110523357
XM_036976972.1 mRNA downstream 2013 17791860 ~ 17871592 (+) False LOC110523357
XM_036976973.1 mRNA downstream 2013 17791860 ~ 17871592 (+) False LOC110523357
TU424889 other upstream 81759 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 907331 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 907331 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1051016 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1568583 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 277596 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 2193414 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2801633 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2953737 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 3041411 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile