RNA id: TU425324



Basic Information


Item Value
RNA id TU425324
length 270
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G374105
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18048939 ~ 18049208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCAGCAAATTACTTTATTTCAGAGATATGCAGCAAACAGTCAGCTACTGTTACCTAAAGTGCACATAGTACATAAGACAGGAAAACACCATAAataacattaacatactgtatacagtacatgtattgtTGAAGGCTTTTAGaccagcaaaggggggaccaactccatattaatgcccatgcttttcaaatgagatgttcgacaagcaggtgtccacgttTGACCATGTAGTCTACCTTCAAAAGGCCCTTTGTCAACTGTCCAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU425325 lncRNA upstream 14325 18033872 ~ 18034614 (+) True G374106
TU425314 lncRNA upstream 38558 18010112 ~ 18010381 (+) True G374095
TU425313 lncRNA upstream 45786 18002824 ~ 18003153 (+) True G374094
TU425044 lncRNA upstream 94149 17912480 ~ 17954790 (+) False G373848
TU425045 lncRNA upstream 94149 17948173 ~ 17954790 (+) True G373848
TU425384 lncRNA downstream 72183 18121391 ~ 18122615 (+) True G374157
TU425341 lncRNA downstream 130334 18179542 ~ 18181098 (+) False G374120
TU425342 lncRNA downstream 130334 18179542 ~ 18181098 (+) True G374120
TU425539 lncRNA downstream 133271 18182479 ~ 18182694 (+) True G374291
TU425540 lncRNA downstream 133542 18182750 ~ 18183159 (+) True G374292
XM_021601989.2 mRNA upstream 1308 18040703 ~ 18047631 (+) False btf3
XM_021601990.2 mRNA upstream 1308 18040727 ~ 18047631 (+) True btf3
XM_036976541.1 mRNA upstream 118775 17900493 ~ 17930164 (+) True tmem174
XM_021601985.2 mRNA upstream 169714 17877617 ~ 17879225 (+) True LOC110523359
XM_036976977.1 mRNA upstream 177347 17791868 ~ 17871592 (+) False LOC110523357
XM_036976985.1 mRNA downstream 18142 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA downstream 18142 18067350 ~ 18177035 (+) False arhgef28a
XM_036976987.1 mRNA downstream 18142 18067350 ~ 18177035 (+) False arhgef28a
XM_036976988.1 mRNA downstream 18142 18067350 ~ 18177035 (+) False arhgef28a
XR_002473438.2 mRNA downstream 347120 18396328 ~ 18410126 (+) False LOC110523365
TU424889 other upstream 341182 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1166754 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1166754 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1310439 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 1828006 16219606 ~ 16220933 (+) True G372281
TU425343 other downstream 18235 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 1934053 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2542272 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2694376 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2782050 20831258 ~ 20836559 (+) True LOC110522817

Expression Profile