RNA id: TU425342


Basic Information

Item Value
RNA id TU425342
length 1407
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G374120
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18179542 ~ 18181098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAacttcataggctaggttgtggCAACCTCATGATGGTATAGGGAACATTTCAGTATAATGTGTATTAGCCTAAAGCtttcaatgttacattgagctgggtgagtggaatatgaatgacagtcatccagtatgctgtaatagaaataaggccatgcccaTAGAAAAAATGTGCGTCCTCCCTTATCTTAAACGACACCGACCGCCAACTGGTTTTATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATGAATTAAATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGTGTCAGTTTATATGCATCATATTGTGATGCATCACATATTTTTTCAAAATATGATGCATAGCAATGCTATCATGTTTGGGTAGTAGCCTATGGTTGAAAGATGACTGATGGAATGACTCTTCTAAGCACCTAAACGGTAACCTTGCTTTCTACTCAGAGCTCTAACATTGTACTTGAATATTCATGTGCTACTTTACTACCAACGTGTTGTTTTGTTTATTAATGGCCTTTGACGTCCTGAAAGTCAGTCTTTAGCTGTCCCACAGCTACCATTAAAAACACAACACAAATAAGACAGTAGACCTAAAGGACCATGTAGGGGGAatcccaaatgataccctatttcctatacagtatagtgtttgACCATGGCCTATGGGGCTCTGGTGAATAGTAGTACATAATATAGAGAATAAGTATCCAGGTAGTGTAATAGGTAGCTTCATCTGCATAAAACACCACAATGGTTATGTTGGACAGCAAATTACTTTTATGTGTATATTTCAGTGCCTTTATTTATTAATTGTAGATTTATATAGTTGTTTTACATACTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425384 lncRNA upstream 56927 18121391 ~ 18122615 (+) True G374157
TU425324 lncRNA upstream 130334 18048939 ~ 18049208 (+) True G374105
TU425325 lncRNA upstream 144928 18033872 ~ 18034614 (+) True G374106
TU425314 lncRNA upstream 169161 18010112 ~ 18010381 (+) True G374095
TU425313 lncRNA upstream 176389 18002824 ~ 18003153 (+) True G374094
TU425539 lncRNA downstream 1381 18182479 ~ 18182694 (+) True G374291
TU425540 lncRNA downstream 1652 18182750 ~ 18183159 (+) True G374292
TU425564 lncRNA downstream 23282 18204380 ~ 18204663 (+) True G374316
TU425579 lncRNA downstream 42631 18223729 ~ 18223994 (+) True G374331
TU425607 lncRNA downstream 65282 18246380 ~ 18246703 (+) True G374359
XM_036976985.1 mRNA upstream 2507 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA upstream 2507 18067350 ~ 18177035 (+) False arhgef28a
XM_036976987.1 mRNA upstream 2507 18067350 ~ 18177035 (+) False arhgef28a
XM_036976988.1 mRNA upstream 2507 18067350 ~ 18177035 (+) False arhgef28a
XM_021601990.2 mRNA upstream 131911 18040727 ~ 18047631 (+) True btf3
XR_002473438.2 mRNA downstream 215230 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA downstream 215233 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA downstream 215557 18396655 ~ 18410126 (+) True LOC110523365
XM_021601997.2 mRNA downstream 234676 18415774 ~ 18422258 (+) True LOC110523366
XM_021602001.2 mRNA downstream 306522 18487620 ~ 18506142 (+) False egfl7
TU425343 other upstream 96177 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 471785 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1297357 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1297357 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1441042 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1802163 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2410382 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2562486 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2650160 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2927071 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile