RNA id: TU425579


Basic Information

Item Value
RNA id TU425579
length 266
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G374331
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18223729 ~ 18223994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctggagagccctgaaaatagctgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaatacatgaggctgtaatcgctaccaaaggtgcttcaacaaagtactgagtaacgggtctgaatacttatgtaaatgtgatatttaaatgaacctgttttgtttggtcatcgtggggtattgtgtgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425564 lncRNA upstream 19066 18204380 ~ 18204663 (+) True G374316
TU425540 lncRNA upstream 40570 18182750 ~ 18183159 (+) True G374292
TU425539 lncRNA upstream 41035 18182479 ~ 18182694 (+) True G374291
TU425341 lncRNA upstream 42631 18179542 ~ 18181098 (+) False G374120
TU425342 lncRNA upstream 42631 18179542 ~ 18181098 (+) True G374120
TU425607 lncRNA downstream 22386 18246380 ~ 18246703 (+) True G374359
TU425609 lncRNA downstream 24058 18248052 ~ 18248288 (+) True G374361
TU425615 lncRNA downstream 32530 18256524 ~ 18256949 (+) True G374367
TU425620 lncRNA downstream 36279 18260273 ~ 18260531 (+) True G374372
TU425638 lncRNA downstream 59993 18283987 ~ 18284472 (+) True G374389
XM_036976985.1 mRNA upstream 46694 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA upstream 46694 18067350 ~ 18177035 (+) False arhgef28a
XM_036976987.1 mRNA upstream 46694 18067350 ~ 18177035 (+) False arhgef28a
XM_036976988.1 mRNA upstream 46694 18067350 ~ 18177035 (+) False arhgef28a
XM_021601990.2 mRNA upstream 176098 18040727 ~ 18047631 (+) True btf3
XR_002473438.2 mRNA downstream 172334 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA downstream 172337 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA downstream 172661 18396655 ~ 18410126 (+) True LOC110523365
XM_021601997.2 mRNA downstream 191780 18415774 ~ 18422258 (+) True LOC110523366
XM_021602001.2 mRNA downstream 263626 18487620 ~ 18506142 (+) False egfl7
TU425343 other upstream 140364 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 515972 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1341544 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1341544 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1485229 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1759267 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2367486 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2519590 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2607264 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2884175 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile