RNA id: TCONS_00031399


Basic Information

Item Value
RNA id TCONS_00031399
length 874
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_015792
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42247560 ~ 42250254 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGACTCGAGTAAAATGGCAGCTGAATCCAGTGTTTCTTTCGCTCAGGATCAGTTCAACTGTTCAATATGTCTGGATCTACTGAAGGATCCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTATTGGGATCAGGATGAGTGGAGAGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTGGTGGAAAATATCAGGAAGAGAAAACTACAAGCTGGAGATGTGGAGTGTGATGTCTGTATCGGGAAAGCTGTTAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTGAACAACACGAGGAATTTCACTCTAGAAAGCGTCACAAAGTGACTGATGCCAATGGACGGCTGCAGGAGATGATCTGCCCTCAACATGACAGACTGCTAGAAATGTACTGCAGAACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAAACCCATGAAACTGTGTTACCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAACGAGAAACTCCAGCAGAGAATACAGGAGAAACAAAAACAATGTGAGGAGCTGAGAGCGGCTGTAGAGTCTCACAAGGTGAGTTTTGAgcagaagatcaactgctggctGCTGGAAGAGCTGCTTCCTCCAGTCAGTCTATGGAGCTTATGACAATAATTTGTATATCTGAAATTAAACcatagatggatgaatagttCCTCCAGTTAAATGAACCTAAACCAGAGCTGATTTTGCTTGGCTCCAATTTGCAGTTTGAAAAATACAGTGTTCTCTTGGGTTGTTaaaggtc

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-228 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000101230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031392 lncRNA upstream 65180 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033295 lncRNA upstream 234210 42013076 ~ 42013350 (+) True XLOC_015783
TCONS_00031384 lncRNA upstream 365400 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 451991 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 475519 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033638 lncRNA downstream 162201 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 171116 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 368174 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 396701 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031425 lncRNA downstream 524662 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00031397 mRNA upstream 4826 42236118 ~ 42242734 (+) False XLOC_015791
TCONS_00031398 mRNA upstream 7659 42236123 ~ 42239901 (+) True XLOC_015791
TCONS_00031396 mRNA upstream 22857 42212948 ~ 42224703 (+) True XLOC_015790
TCONS_00031395 mRNA upstream 37034 42200390 ~ 42210526 (+) True XLOC_015789
TCONS_00031394 mRNA upstream 48960 42191592 ~ 42198600 (+) True XLOC_015788
TCONS_00031401 mRNA downstream 11334 42260021 ~ 42261025 (+) False XLOC_015793
TCONS_00031402 mRNA downstream 11334 42260021 ~ 42261298 (+) False XLOC_015793
TCONS_00031403 mRNA downstream 11334 42260021 ~ 42261299 (+) False XLOC_015793
TCONS_00031404 mRNA downstream 11334 42260021 ~ 42334707 (+) False XLOC_015793
TCONS_00031405 mRNA downstream 23143 42271830 ~ 42272871 (+) False XLOC_015794
TCONS_00031377 other upstream 1211369 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2190544 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4369256 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4410640 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 5045973 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 174997 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 338051 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 750115 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 1030914 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2103986 44352673 ~ 44353567 (+) False XLOC_015820