RNA id: TU425807



Basic Information


Item Value
RNA id TU425807
length 971
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G374536
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18589649 ~ 18590768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGAATGCTCATTCAAAAACTTTATTGAATTGTAATACCACAGTTACTGAACCATACTGTACTCTCTTGTAGCCTACACATTTTATTGTCAAATACTAGCCAAATACTGTAACAGCTACATTTTTTGGGGATATGTTGATTTTcagaactgttttttttttcttcaataaatTATATTTTAACATTAATATGAATGTGATGTAGAAGTCAATCtataaaatgtattgaaattgAAAATGTTCTTCAACAACTGTCAATTTGAATATTGAGAACCCATAGCCCAATAAAAAAATTAATGTATCCTAATATTAAACAAACATAAATAATTaaaacattgaacaataacaagtGCAATTTCAACATAACCAACATAATTCAGAATCAAACAATTCACATACAACAGACAAACCCTCTTCACCAACAATAACAGTTTTCATCcgcatgactaagtcgctttggatataAGCatttgctaaatggcatatacgcATTTAAATGTTTGATAAGAAATCTTGAAAGATCttcctgtaaaaaaaaacatctgtgcTTCTGTTGCTTTACTTCCCAGTTGATTTATTTTTCCTGGATAGAGGTAGAAATTGGAGCATTCTCTTCACAGGTTTCTCAAATTTGGTCTTCTGAAAAAGAGCCCAGAAATAATCGATTGTTAACAAACCAAGCCAACAAACACCAATTCATCACAAACCTATTCCAGACAGATTGGAACACACTGTAAAGCCCCTTGCACACTGCCCATTACAATGCCTAATAAACTCCAACAAAAACATAGGGGCACACCCAGTACTTAATTTGTAAATCGGGAGGTACCGGAACAAAATGTGAGCGGGAGAGAGGGGTGCCCTAGGGAGCTCTGAGGTACTGGAACAAAATGTGAGCGGGAGAGAGGGGTGCCCTAGGGAGCTCTGAGGTACTGGAACAAAATGTGAGCGGGAGAGAGGGGTGCCCTAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU425771 lncRNA upstream 8191 18578685 ~ 18581458 (+) True G374504
TU425773 lncRNA upstream 24612 18564063 ~ 18565037 (+) True LOC110523370
TU425791 lncRNA upstream 29487 18559945 ~ 18560162 (+) True G374522
TU425786 lncRNA upstream 31988 18546471 ~ 18557661 (+) True G374518
TU425785 lncRNA upstream 43334 18546107 ~ 18546315 (+) True G374517
TU425853 lncRNA downstream 51824 18642592 ~ 18737468 (+) True G374582
TU426209 lncRNA downstream 158850 18749618 ~ 18749824 (+) True G374907
TU426210 lncRNA downstream 159256 18750024 ~ 18750238 (+) True G374908
TU426245 lncRNA downstream 188500 18779268 ~ 18779531 (+) True G374943
TU426265 lncRNA downstream 201504 18792272 ~ 18792509 (+) True G374963
XM_036976994.1 mRNA upstream 11421 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 11421 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 11421 18558182 ~ 18578228 (+) False LOC110523370
XM_021601999.2 mRNA upstream 83507 18488867 ~ 18506142 (+) False egfl7
XM_021602038.2 mRNA downstream 767503 19358271 ~ 19364089 (+) True LOC110523377
XM_021602045.2 mRNA downstream 908836 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 1460625 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 1460630 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 1460630 20051398 ~ 20264903 (+) False LOC110523391
TU425343 other upstream 506284 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 881892 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1707464 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1707464 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1851149 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1392493 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2000712 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2152816 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2240490 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2517401 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile