RNA id: TU426209


Basic Information

Item Value
RNA id TU426209
length 207
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G374907
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18749618 ~ 18749824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCCTGCTCAGCTGTGAGAAGTCTCCACCTACCTCCCATAGATGGCCGCCTCtcagttgtcgtgtctttggctatgccggattaagtaaTATGaaatgctattctataaaataatttctccgtaattaatattacctgattgagctaatcatgtaaatgtaattaactagagagtcggggcaccacaaaatgatatttatagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425853 lncRNA upstream 12150 18642592 ~ 18737468 (+) True G374582
TU425795 lncRNA upstream 124905 18565085 ~ 18624713 (+) True G374526
TU425807 lncRNA upstream 158850 18589649 ~ 18590768 (+) True G374536
TU425771 lncRNA upstream 168160 18578685 ~ 18581458 (+) True G374504
TU425773 lncRNA upstream 184581 18564063 ~ 18565037 (+) True LOC110523370
TU426210 lncRNA downstream 200 18750024 ~ 18750238 (+) True G374908
TU426245 lncRNA downstream 29444 18779268 ~ 18779531 (+) True G374943
TU426265 lncRNA downstream 42448 18792272 ~ 18792509 (+) True G374963
TU426319 lncRNA downstream 103459 18853283 ~ 18857666 (+) True G375010
TU426338 lncRNA downstream 115174 18864998 ~ 18866381 (+) True G375019
XM_036976994.1 mRNA upstream 171390 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 171390 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 171390 18558182 ~ 18578228 (+) False LOC110523370
XM_021601999.2 mRNA upstream 243476 18488867 ~ 18506142 (+) False egfl7
XM_021602038.2 mRNA downstream 608447 19358271 ~ 19364089 (+) True LOC110523377
XM_021602045.2 mRNA downstream 749780 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 1301569 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 1301574 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 1301574 20051398 ~ 20264903 (+) False LOC110523391
TU425343 other upstream 666253 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1041861 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1867433 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1867433 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2011118 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1233437 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1841656 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1993760 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2081434 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2358345 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile