RNA id: TCONS_00031400


Basic Information

Item Value
RNA id TCONS_00031400
length 830
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_015792
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42247560 ~ 42250254 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGCTGAATCCAGTGTTTCTTTCGCTCAGGATCAGTTCAACTGTTCAATATGTCTGGATCTACTGAAGGATCCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGACTATTGGGATCAGGATGAGTGGAGAGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGACTGAAGTGGTGGAAAATATCAGGAAGAGAAAACTACAAGCTGGAGATGTGGAGTGTGATGTCTGTATCGGGAAAGCTGTTAAGTCTTGTCTGGTGTGTCTGGAATCTTACTGTCAGACTCACTTTGAACAACACGAGGAATTTCACTCTAGAAAGCGTCACAAAGTGACTGATGCCAATGGACGGCTGCAGGAGATGATCTGCCCTCAACATGACAGACTGCTAGAAATGTACTGCAGAACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAAACCCATGAAACTGTGTTACCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAACGAGAAACTCCAGCAGAGAATACAGGAGAAACAAAAACAATGTGAGGAGCTGAGAGCGGCTGTAGAGTCTCACAAGCGCTCTGTACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCACATACGCTCCATCGAGAGAAGCCGCTCTAAGGTGACACAGCTGATCAGAGATCAGGGAAAGGCTTCAGTAAGTGGAGCTGAAGGACGACTGGAGCAACTGGAGCAGGAGATTGATGATCTGAGGAGGAGAAACACTGA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-228 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000143094

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031392 lncRNA upstream 65198 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033295 lncRNA upstream 234228 42013076 ~ 42013350 (+) True XLOC_015783
TCONS_00031384 lncRNA upstream 365418 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 452009 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 475537 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033638 lncRNA downstream 160634 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 169549 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 366607 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 395134 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031425 lncRNA downstream 523095 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00031397 mRNA upstream 4844 42236118 ~ 42242734 (+) False XLOC_015791
TCONS_00031398 mRNA upstream 7677 42236123 ~ 42239901 (+) True XLOC_015791
TCONS_00031396 mRNA upstream 22875 42212948 ~ 42224703 (+) True XLOC_015790
TCONS_00031395 mRNA upstream 37052 42200390 ~ 42210526 (+) True XLOC_015789
TCONS_00031394 mRNA upstream 48978 42191592 ~ 42198600 (+) True XLOC_015788
TCONS_00031401 mRNA downstream 9767 42260021 ~ 42261025 (+) False XLOC_015793
TCONS_00031402 mRNA downstream 9767 42260021 ~ 42261298 (+) False XLOC_015793
TCONS_00031403 mRNA downstream 9767 42260021 ~ 42261299 (+) False XLOC_015793
TCONS_00031404 mRNA downstream 9767 42260021 ~ 42334707 (+) False XLOC_015793
TCONS_00031405 mRNA downstream 21576 42271830 ~ 42272871 (+) False XLOC_015794
TCONS_00031377 other upstream 1211387 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2190562 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4369274 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4410658 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 5045991 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 173430 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 336484 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 748548 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 1029347 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2102419 44352673 ~ 44353567 (+) False XLOC_015820

Expression Profile

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