RNA id: TU426851



Basic Information


Item Value
RNA id TU426851
length 298
lncRNA type intronic
GC content 0.37
exon number 3
gene id G375444
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19308826 ~ 19309308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaacattgtagcgatgcagtattgaggttacaagaagaaacattgtagctatgcagtattgaggttacaagaagaaacattgtagctacgcagtattgaggttacaataagaaacattgtatcaacgcagtattgaggttacaagaagaaacattgtagctacgcagtattgaggttacaagaagaaacattgtaaccctgcagtattgaggttacaagaagaaacattgtagcgatgcagtattgaggttaggagaagaaacattgtagctatgcagtattgaggttacaagaagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU426808 lncRNA upstream 55582 19252927 ~ 19253244 (+) True G375421
TU426759 lncRNA upstream 146245 19162252 ~ 19162581 (+) True G375374
TU426754 lncRNA upstream 149292 19159315 ~ 19159534 (+) True G375369
TU426750 lncRNA upstream 152644 19155917 ~ 19156182 (+) True G375365
TU426706 lncRNA upstream 194293 19113571 ~ 19114533 (+) True G375322
TU426852 lncRNA downstream 596 19309904 ~ 19310293 (+) True G375445
TU426885 lncRNA downstream 43983 19353291 ~ 19353588 (+) True G375477
TU426889 lncRNA downstream 46566 19355874 ~ 19356118 (+) True G375481
TU426893 lncRNA downstream 66981 19376289 ~ 19376554 (+) True G375485
TU426894 lncRNA downstream 68138 19377446 ~ 19377709 (+) True G375486
XM_036976994.1 mRNA upstream 730598 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 730598 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 730598 18558182 ~ 18578228 (+) False LOC110523370
XM_021601999.2 mRNA upstream 802684 18488867 ~ 18506142 (+) False egfl7
XM_021602038.2 mRNA downstream 48963 19358271 ~ 19364089 (+) True LOC110523377
XM_021602045.2 mRNA downstream 190296 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 742085 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 742090 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 742090 20051398 ~ 20264903 (+) False LOC110523391
TU425343 other upstream 1225461 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1601069 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2426641 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2426641 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2570326 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 673953 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1282172 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1434276 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1521950 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1798861 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile