RNA id: TCONS_00031404


Basic Information

Item Value
RNA id TCONS_00031404
length 3609
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_015793
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42260021 ~ 42334707 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAAAACCCAGTGTTTATTTGGCTCAGGATCAATTCAGATGTTCAGTCTGTCAGGATCTACTGAAGGATCCAGTGGCCATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGGCTACTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCAAAGACCTGCTTTAGGGAAAAACACCATGCTGGCTGAAGTGGTGGAGAATATCAGGAAGAGAAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTTTAGATGTGGAGTGTGATGTTTGTACTGGGAGAAAATATAAAGCTGTTAAATCTTGTCTGGTGTGTCTGGAATCTTACTGTCTGATTCACTTTGAACAACACGAGGAAATTCACCCTGGAAAGCGTCACAAAGTGACTGATGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGACAGACTACTAGAAATGTACTGCAGGACTGACCAGCGCTGTATTTGCATGCTGTGCTTGATGAATGAACACAAAACCCATGAAACTGTGTTACCAGCTGAAGAGAGAGCAGAGAAACAGAAACATTTTAAAGAGACACTTAAGCCAAAAATGGAGGAGAGACAGGTGGGGTGTCAGATGCTGAGAGCTGCTGTAAAGTCTCACAAGGTGAGTTTTGAGCAGAAGATCACTTGCTGGAGGAGCTGTTTgagactaaggccccgtttacactaatgcgttttagtttgaaaacgcataagttttgctacggttacgccatccgtccacactacgccggagttctcgagcgccgaaaacggagcgtttcgaaaacgctggagaggccgttttcattctaaaacgctgcagctccgtctcagtgtgggtggggaaagacggagacatctgaaaacggaggcggggctgcagacattcgcctctctgattggggcttttcctcaatattaagtagcctaacacacagttcagtcctgaatcttctccgtgtaagttcagacttcgcaagtttgatcaaggctgcatctcttcttctcagtttgatatggaaaacataccgaggacacgcgtcaatcttcacagggaacagtgtactttataacttcattcacatcaccttggctacgttgtttcactttctcaacaataaaatgtaaacttgatataaggaactgcctatttttattttaatattaacaactaaacagacagcagaaatgttgaggcgtcgtgctgcatgagcgtcatcttcactgtctgcatatttataacaaaacggagccgataacaactgcctcctttcaatttcagtgaaaatacgaaacacaccctctcttttgctgaagttttaataatcgataatggccattataaaagtataacatacaataagtttatacattataggaaataaaggctagcgatcagtcaatatacagaatgtacgtgcttacattaatcattaacttatctttgcgctcagccaaaacacgttacctgagaacaagtaatagattccagtgaccaaagtcagggaatatgtcgttagataaagacaacaagatgaatgaaatatcccgtttaataaatatagtgagattagatccagcgggagatgcttgatgagaagtccgactagcagagctctcatctgggtagatgggctccagcgattgccaaagtgtgtgtgtgtggtcacgtgatgtgcgttttcagcgttttggtgtggacggagagcagttcagaaacgctgggtaaaacgcgagtgtggacgcggatcgttttcattctaaaacgccgttttaaaactaatacgcactagtgtaaacggggccactTAAGCCCCTGTGGGGAACAGGCTGTGTGAGGCAGTAAGAGCTGACTGATTCTGCTGCTTCTCTCTGTGTGTCCTAACAGCGCTCTGCACAGGCAGCAGTGGACAACACTGAGGCAATCTTTAATGAGCTCATCCAGTTAATAGAGAGAAACCGCTCAAAGGTGACACAAATGATCAGAGATCAGGAAAAGGCTGCAGTGACTGGAGTTGAAGGACAACTGAAGCGACTGGAGCAGGAGACTGATGATCTAAGGAGGAGAGACGCTGAGCTGGAGCAGCTTATATGCACAGACAACGACATCTACTTCCTCCAGGTAACACAGAACTGACAAACAGCACattgtgtttattaaggtgtctaattttttttaatgttcttcttgttttgttttttgtgtctaTGTAGAGTTTCCAGTCTCTTTCTGTTCCTCCTGGATCTACAAACTCATCCAGCATCAGTTCTCATGTCTCTTTTGGTGATTTGGTAACATCTGTTTCTCAGCTGAAAGAGAAACTGCAGCAGACTGTTAAAGAAGAGATGAAAAAGTTATTTCAAACAAGTAAATCATTGAAGCATTAATTCAGTGTCAGAAGTTTCAATATTATGAACATGATAAACAATGTAAGCCCAAAATACACtgtgtaaaatgtataaatataatcatGCAACACTGAAAATGTTTGTTGGTTTTCTTAGGGGAATGCATCAGTGTGATTCCCACCCCTGAATACCAGAACAGGAACAATGAGTTTCTACAGTGTAAGtacttttaatagttttttgtttgtttgattttaataaacaataaccTAGACATAAAAAGAAGATAACAACAAGCAGGTAGGCCTACTAAAATGGCAGGTCTGTTTATTAAAGGGCTTCAATTTTGGCCTTTGACAAGAtataaaataagtgttttatgTCTCTAGAAAAAACCTATCAGATCAATTATTATACCCtgcaaaaaattacattttgggcTCAGAGGAAATAAAATGAGCTGGTTCTTCCCGCCCACTGTTGGACCATTTGTTCAAAGTGAAAGATAACCAGGGTTGATGACCACAAATAAGTAATGAGAAGCACCTTTCGTTGCATTCCAAACAGTGTATATTGCCCACCAAAGGGCACTTTGGAAATGAAAAATCGTGGCGCCATATTGTCAAGTGTCATTTCTAACTGCACTTCAATTCAGAAGGCCTCGTCTCTGCTATAatccagggatgtcaaactcaattcctggaaggccgcagccctgcacagtttagttccaaccctgctccaacacacttaagctgtggtcacactacaGTTTAAGttagcaaaattctgtcatacggcgctgtgaaaaggggcgggattaaaaaagatgattagacattaaaaaaagcaagcgattggtccatatttaacatttctgtacagaaaggtcatgtttGGATCTTTGATtgttctcacgcagtcaagtgatgcgattccgcaggtcagagttcaccaagcttgaactttccaacgcagcgatctgcgaaacttgacgcatgaccttgagtttccggtctgatgcatatgcgtgcatatgaatggaagtcattggggagaaaagtccagtgtgaccgcagcttaccctgtatgtttcaaacaagcctgaaggactcaattagtttgatcaggtgtgtttaattagggttggaactaaactatgcagagctgcggccctccagaaattgagtttgacatccctgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193349

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031392 lncRNA upstream 77641 42176922 ~ 42182380 (+) False XLOC_015787
TCONS_00033295 lncRNA upstream 246671 42013076 ~ 42013350 (+) True XLOC_015783
TCONS_00031384 lncRNA upstream 377861 41876622 ~ 41882160 (+) True XLOC_015780
TCONS_00033637 lncRNA upstream 464452 41771346 ~ 41795569 (+) True XLOC_015779
TCONS_00033294 lncRNA upstream 487980 41771111 ~ 41772041 (+) False XLOC_015779
TCONS_00033638 lncRNA downstream 76181 42410888 ~ 42422644 (+) False XLOC_015798
TCONS_00033639 lncRNA downstream 85096 42419803 ~ 42422644 (+) True XLOC_015798
TCONS_00033640 lncRNA downstream 282154 42616861 ~ 42624890 (+) True XLOC_015802
TCONS_00033296 lncRNA downstream 310681 42645388 ~ 42645994 (+) True XLOC_015803
TCONS_00031425 lncRNA downstream 438642 42773349 ~ 42774516 (+) False XLOC_015807
TCONS_00031400 mRNA upstream 9767 42247578 ~ 42250254 (+) True XLOC_015792
TCONS_00031399 mRNA upstream 11334 42247560 ~ 42248687 (+) False XLOC_015792
TCONS_00031397 mRNA upstream 17287 42236118 ~ 42242734 (+) False XLOC_015791
TCONS_00031398 mRNA upstream 20120 42236123 ~ 42239901 (+) True XLOC_015791
TCONS_00031396 mRNA upstream 35318 42212948 ~ 42224703 (+) True XLOC_015790
TCONS_00031412 mRNA downstream 9597 42344304 ~ 42345571 (+) True XLOC_015797
TCONS_00031415 mRNA downstream 257865 42592572 ~ 42600113 (+) False XLOC_015801
TCONS_00031416 mRNA downstream 258144 42592851 ~ 42600087 (+) True XLOC_015801
TCONS_00031417 mRNA downstream 373967 42708674 ~ 42710206 (+) False XLOC_015804
TCONS_00031418 mRNA downstream 373977 42708684 ~ 42713902 (+) True XLOC_015804
TCONS_00031377 other upstream 1223830 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031374 other upstream 2203005 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031335 other upstream 4381717 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 4423101 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 5058434 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031413 other downstream 88977 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 252031 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 664095 42998802 ~ 42998919 (+) True XLOC_015810
TCONS_00031434 other downstream 944894 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031447 other downstream 2017966 44352673 ~ 44353567 (+) False XLOC_015820

Expression Profile

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