RNA id: TU426902


Basic Information

Item Value
RNA id TU426902
length 227
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G375494
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19388363 ~ 19388589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaatgGTCTTGGgtggtttttcatggttcgggctaggccccttatttctagtgaagggaaatcttaacgcacAGCATACAAGGACATTCtaaacaattctgtgcttccaacattgtagCAACAGTTAGGGGGGAAaaaacgaggtccatacagaaatggtttgtcaagatcggtgtggaagatcttgactggcctgcacagagccctgacctcaacaccatcgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426899 lncRNA upstream 4514 19383609 ~ 19383849 (+) True G375491
TU426896 lncRNA upstream 8988 19379149 ~ 19379375 (+) True G375488
TU426894 lncRNA upstream 10654 19377446 ~ 19377709 (+) True G375486
TU426893 lncRNA upstream 11809 19376289 ~ 19376554 (+) True G375485
TU426889 lncRNA upstream 32245 19355874 ~ 19356118 (+) True G375481
TU427049 lncRNA downstream 5613 19394202 ~ 19394536 (+) True G375610
TU427069 lncRNA downstream 33539 19422128 ~ 19422768 (+) True G375629
TU427137 lncRNA downstream 87432 19476021 ~ 19476406 (+) True G375696
TU427149 lncRNA downstream 94648 19483237 ~ 19483517 (+) True G375708
TU427164 lncRNA downstream 102693 19491282 ~ 19491488 (+) True G375723
XM_021602038.2 mRNA upstream 24274 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 810135 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 810135 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 810135 18558182 ~ 18578228 (+) False LOC110523370
XM_021602000.2 mRNA upstream 882221 18488867 ~ 18506142 (+) True egfl7
XM_021602045.2 mRNA downstream 111015 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 662804 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 662809 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 662809 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 662810 20051399 ~ 20264903 (+) True LOC110523391
TU425343 other upstream 1304998 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1680606 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2506178 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2506178 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2649863 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 594672 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1202891 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1354995 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1442669 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1719580 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile