RNA id: TU427337


Basic Information

Item Value
RNA id TU427337
length 1018
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G375871
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19621070 ~ 19622673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTCATCATCAGTATTTGATCCAGTATATATTTAGTGTGCTTTATAGTCTTATTGATGGCTGCCATCAATAGCTGTGCTAGTTTCTCCAATAATAATCAACAGCACCATCAACAAAATCACACGATTTTGGGTGCGAGCACACATGCAGAGGGAATACATCATTACATTTCCAGGCCTTGTTTTCTACTTTGTTTACCGGGCTATCATCTAAAACCAATCATATCCTATTCCTGGTCTGACAAAGTTCTGTCTGAAATAGAAAGGTCCCATTTCTAGCGATAGATTTCTATAATTCAGTAAGTGTTCCAGCCATTGTTACCCGCATGGAGAAAGCCAACAGGTtgattgtttttgttattttccaTTTGACAGATCATTTGctcagagagaaaagagacagagggaaagagagaggcacATGTAGAATCCCAAAATGAATGACTATGCGTGCAGTTGAACCCTATGGAGGGCAAATTGACTAATTGTTAATTATGGAAGGCTGATGAAAATTGCTCAAGTGTAAATGAAGGTGTCACATTGGAGAGGCACTGTAGTTCAGACACACCTACCCCCTTAGTGGACAATCAGCATTATTTTAAACTTGACAGGACACACTGGGCTGTTGAACAGGCAGCTATAGCGGACTTATTCACTGATTAATTACACTGCAGAGGTTGGAAATATTACAGGGGGAAATGAAATGAGAATGATCACTGCTATGGCGACAGGGCAGGGGTAATGTGGAGTCGGGAGCGGGATGAGCTACGGAAAGATAAGTAAAGCCAAAAAGGAGTGAGGGGGTAGAACTAACGGAAAGAGCATGATGATGGTAGAAGTTCAAAGAGGGCAAGGAAAACTACCTATGACTGGACAGTAGTATTGAAGTGGTATCAGCCAGGCCAGAAAAGTATAGTGGAGAGTTTGAaaaatatagagacaaagtggtaGAACTGTGTGACCGCACTGCAGTAGATGGGGATGCACAACCACAGTATTGTCCACTAACATCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427191 lncRNA upstream 108779 19506617 ~ 19512291 (+) False LOC110523383
TU427190 lncRNA upstream 108779 19506864 ~ 19512291 (+) False LOC110523383
TU427186 lncRNA upstream 108779 19508621 ~ 19512291 (+) True LOC110523383
TU427176 lncRNA upstream 110335 19506864 ~ 19510735 (+) False LOC110523383
TU427179 lncRNA upstream 112096 19506617 ~ 19508974 (+) False LOC110523383
TU427453 lncRNA downstream 183642 19805729 ~ 19812504 (+) True G375980
TU427732 lncRNA downstream 295764 19917851 ~ 19918156 (+) True G376250
TU427749 lncRNA downstream 304534 19926621 ~ 19926821 (+) True G376267
TU427769 lncRNA downstream 327989 19950076 ~ 19950291 (+) True G376287
TU427801 lncRNA downstream 360706 19982793 ~ 19983038 (+) True G376319
XM_021602045.2 mRNA upstream 112005 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 256981 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1042842 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 1042842 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 1042842 18558182 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 429306 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 429311 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 429311 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 429312 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 768443 20390530 ~ 20414156 (+) True LOC110523393
TU425343 other upstream 1537705 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1913313 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2738885 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2738885 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2882570 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 361174 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 969393 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1121497 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1209171 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1486082 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile