RNA id: TU427749


Basic Information

Item Value
RNA id TU427749
length 201
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G376267
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19926621 ~ 19926821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaagaggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttgttccacttcatgattgtgtcccacttgttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427732 lncRNA upstream 8465 19917851 ~ 19918156 (+) True G376250
TU427453 lncRNA upstream 114117 19805729 ~ 19812504 (+) True G375980
TU427338 lncRNA upstream 303948 19621152 ~ 19622673 (+) True G375871
TU427337 lncRNA upstream 304534 19621070 ~ 19622087 (+) False G375871
TU427190 lncRNA upstream 414330 19506864 ~ 19512291 (+) False LOC110523383
TU427769 lncRNA downstream 23255 19950076 ~ 19950291 (+) True G376287
TU427801 lncRNA downstream 55972 19982793 ~ 19983038 (+) True G376319
TU427803 lncRNA downstream 57830 19984651 ~ 19984987 (+) True G376321
TU427804 lncRNA downstream 59973 19986794 ~ 19987027 (+) True G376322
TU427806 lncRNA downstream 60691 19987512 ~ 19989759 (+) False G376323
XM_021602045.2 mRNA upstream 417556 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 562532 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1348393 18558152 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 124572 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 124577 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 124577 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 124578 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 463709 20390530 ~ 20414156 (+) True LOC110523393
TU425343 other upstream 1843256 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2218864 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3044436 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 3044436 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 3188121 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 56440 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 664659 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 816763 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 904437 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1181348 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile