RNA id: TU427769


Basic Information

Item Value
RNA id TU427769
length 216
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G376287
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19950076 ~ 19950291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgggaggttcgtcagctacatgggaaacacctgggcccggtgtgtcccaggataaatacaccacttccccattcatggagaagactctctccatgcagacacctttatagattttgttgtgtatcttggtggccttttggttgtttgctttggcacctttcaacaccctgcattatcacattcatgcatgcaaaacactcacttacactactgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427749 lncRNA upstream 23255 19926621 ~ 19926821 (+) True G376267
TU427732 lncRNA upstream 31920 19917851 ~ 19918156 (+) True G376250
TU427453 lncRNA upstream 137572 19805729 ~ 19812504 (+) True G375980
TU427338 lncRNA upstream 327403 19621152 ~ 19622673 (+) True G375871
TU427337 lncRNA upstream 327989 19621070 ~ 19622087 (+) False G375871
TU427801 lncRNA downstream 32502 19982793 ~ 19983038 (+) True G376319
TU427803 lncRNA downstream 34360 19984651 ~ 19984987 (+) True G376321
TU427804 lncRNA downstream 36503 19986794 ~ 19987027 (+) True G376322
TU427806 lncRNA downstream 37221 19987512 ~ 19989759 (+) False G376323
TU427807 lncRNA downstream 37221 19987512 ~ 19989759 (+) False G376323
XM_021602045.2 mRNA upstream 441011 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 585987 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1371848 18558152 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 101102 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 101107 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 101107 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 101108 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 440239 20390530 ~ 20414156 (+) True LOC110523393
TU425343 other upstream 1866711 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2242319 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3067891 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 3067891 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 3211576 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 32970 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 641189 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 793293 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 880967 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1157878 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile