RNA id: TU427806


Basic Information

Item Value
RNA id TU427806
length 690
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G376323
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19987512 ~ 19991060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttactcatgcctgaaccagactatcgttgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgcctgtccatctgagcctacgtgtgtttcgtcattaaagaaactctgttttgttcattcgcttttgggtcctcattcacgcacctgacacattgcctttaaatttcaatcccaCTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttaaatttcaatcccactgtaacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttataTTTCAATCCCACTGTAatgctggaacattgcctttaaatttcaatctcACTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCGATCCCCCTGTAacactggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427804 lncRNA upstream 485 19986794 ~ 19987027 (+) True G376322
TU427803 lncRNA upstream 2525 19984651 ~ 19984987 (+) True G376321
TU427801 lncRNA upstream 4474 19982793 ~ 19983038 (+) True G376319
TU427769 lncRNA upstream 37221 19950076 ~ 19950291 (+) True G376287
TU427749 lncRNA upstream 60691 19926621 ~ 19926821 (+) True G376267
TU427810 lncRNA downstream 442 19990201 ~ 19991060 (+) True G376323
TU427815 lncRNA downstream 2918 19992677 ~ 19993109 (+) True G376326
TU427819 lncRNA downstream 8581 19998340 ~ 19998596 (+) True G376330
TU427953 lncRNA downstream 199017 20188776 ~ 20189381 (+) True G376454
TU427970 lncRNA downstream 232177 20221936 ~ 20226766 (+) True G376471
XM_021602045.2 mRNA upstream 478447 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 623423 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 1409284 18558152 ~ 18578228 (+) False LOC110523370
XM_036977015.1 mRNA downstream 61634 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 61639 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 61639 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 61640 20051399 ~ 20264903 (+) True LOC110523391
XM_021602055.2 mRNA downstream 400771 20390530 ~ 20414156 (+) True LOC110523393
TU427802 other upstream 3664 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 1904147 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2279755 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3105327 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 601721 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 753825 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 841499 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1118410 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 2182776 22172535 ~ 22231920 (+) False G378660

Expression Profile