RNA id: TU427999


Basic Information

Item Value
RNA id TU427999
length 274
lncRNA type intronic
GC content 0.41
exon number 1
gene id G376499
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20266886 ~ 20267159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGACTGCACATGCCCCAGTTGCAATAAAGTTTGTGAATCTCGGTTTGGACTCAACAGTCACCAAAGGATTCACCGTTAACTCAGAAGTGGAAGTCATCATCGGATACTATGGGCTACCATAACGAACAGATATGTGTacatgtgcgtgcatgtgtgtgtgtctttctgtgttgTACAAAGCAGTAGAACATTCTATTGTTGTTATCAATAAATGTCACAATAAGGTAAAGAGCATTAGATTTTCCTGCTGGCAAAAACCATTGCATGTAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427970 lncRNA upstream 40120 20221936 ~ 20226766 (+) True G376471
TU427953 lncRNA upstream 77505 20188776 ~ 20189381 (+) True G376454
TU427819 lncRNA upstream 268290 19998340 ~ 19998596 (+) True G376330
TU427815 lncRNA upstream 273777 19992677 ~ 19993109 (+) True G376326
TU427810 lncRNA upstream 275826 19990201 ~ 19991060 (+) True G376323
TU428004 lncRNA downstream 5499 20272658 ~ 20297610 (+) True G376503
TU428038 lncRNA downstream 43657 20310816 ~ 20335580 (+) True G376536
TU428370 lncRNA downstream 116867 20384026 ~ 20384324 (+) True G376857
TU428374 lncRNA downstream 120121 20387280 ~ 20387705 (+) True G376859
TU428380 lncRNA downstream 121106 20388265 ~ 20388600 (+) True G376862
XM_036977012.1 mRNA upstream 1983 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA upstream 1983 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA upstream 1983 20051399 ~ 20264903 (+) True LOC110523391
XM_021602045.2 mRNA upstream 757821 19499604 ~ 19509065 (+) False LOC110523383
XM_021602038.2 mRNA upstream 902797 19358271 ~ 19364089 (+) True LOC110523377
XM_021602055.2 mRNA downstream 123371 20390530 ~ 20414156 (+) True LOC110523393
XM_036977016.1 mRNA downstream 240915 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 240915 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 240915 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 268977 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 283038 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2183521 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2559129 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3384701 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 324321 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 476425 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 564099 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 841010 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1905376 22172535 ~ 22231920 (+) False G378660

Expression Profile