RNA id: TU428370


Basic Information

Item Value
RNA id TU428370
length 299
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G376857
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20384026 ~ 20384324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacttgtatttggggagtttcccccattcttctctgcagacctctgcacagctattttcaggtctctccagatatgttcgatcgggttcaagtccgggttctggctgggccaatcaaggacattcggagacttgtcccgaagccactcctgccttgtcttggctgtgtgcttaaggtcattgtcctgttggaaggtaaacctttttggtacccttcccaagatctgtgctttgacacaaccctgtctctgagctctacagacaattccttcaacattatggcttggtttttgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428038 lncRNA upstream 48446 20310816 ~ 20335580 (+) True G376536
TU428004 lncRNA upstream 86416 20272658 ~ 20297610 (+) True G376503
TU427999 lncRNA upstream 116867 20266886 ~ 20267159 (+) True G376499
TU427970 lncRNA upstream 157260 20221936 ~ 20226766 (+) True G376471
TU427953 lncRNA upstream 194645 20188776 ~ 20189381 (+) True G376454
TU428374 lncRNA downstream 2956 20387280 ~ 20387705 (+) True G376859
TU428380 lncRNA downstream 3941 20388265 ~ 20388600 (+) True G376862
TU428382 lncRNA downstream 5181 20389505 ~ 20389755 (+) True G376864
TU428385 lncRNA downstream 36606 20420930 ~ 20421730 (+) True G376867
TU428457 lncRNA downstream 76680 20461004 ~ 20461340 (+) True G376938
XM_036977015.1 mRNA upstream 2407 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA upstream 119123 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA upstream 119123 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA upstream 119123 20051399 ~ 20264903 (+) True LOC110523391
XM_021602045.2 mRNA upstream 874961 19499604 ~ 19509065 (+) False LOC110523383
XM_021602055.2 mRNA downstream 6206 20390530 ~ 20414156 (+) True LOC110523393
XM_036977016.1 mRNA downstream 123750 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 123750 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 123750 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 151812 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 400178 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2300661 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2676269 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3501841 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 207156 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 359260 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 446934 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 723845 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1788211 22172535 ~ 22231920 (+) False G378660

Expression Profile