RNA id: TU428380


Basic Information

Item Value
RNA id TU428380
length 336
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G376862
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20388265 ~ 20388600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaattgccagctgcttctactttaccatttgattcaggggagaaagcatgtgtccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgatgattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagttcgcgttttgaggactgaattttcggattttttttggcagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggtaaatgatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428374 lncRNA upstream 560 20387280 ~ 20387705 (+) True G376859
TU428370 lncRNA upstream 3941 20384026 ~ 20384324 (+) True G376857
TU428038 lncRNA upstream 52685 20310816 ~ 20335580 (+) True G376536
TU428004 lncRNA upstream 90655 20272658 ~ 20297610 (+) True G376503
TU427999 lncRNA upstream 121106 20266886 ~ 20267159 (+) True G376499
TU428382 lncRNA downstream 905 20389505 ~ 20389755 (+) True G376864
TU428385 lncRNA downstream 32330 20420930 ~ 20421730 (+) True G376867
TU428457 lncRNA downstream 72404 20461004 ~ 20461340 (+) True G376938
TU428491 lncRNA downstream 115421 20504021 ~ 20504333 (+) True G376972
TU428495 lncRNA downstream 124203 20512803 ~ 20513129 (+) True G376976
XM_036977015.1 mRNA upstream 6646 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA upstream 123362 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA upstream 123362 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA upstream 123362 20051399 ~ 20264903 (+) True LOC110523391
XM_021602045.2 mRNA upstream 879200 19499604 ~ 19509065 (+) False LOC110523383
XM_021602055.2 mRNA downstream 1930 20390530 ~ 20414156 (+) True LOC110523393
XM_036977016.1 mRNA downstream 119474 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 119474 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 119474 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 147536 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 404417 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2304900 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2680508 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3506080 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 202880 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 354984 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 442658 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 719569 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1783935 22172535 ~ 22231920 (+) False G378660

Expression Profile