RNA id: TU428457


Basic Information

Item Value
RNA id TU428457
length 337
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G376938
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20461004 ~ 20461340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctagatgcagtcaagagtgtgcaaggcagtttgaatgtgtcactgtctgtcaccttgattactcacatTTTTCTCTAGACCTGTGCACCTTCGCTGTAAACTTCCATTCATAAGCTGCTGTAGGTTGTAGCAAGCTCATGATGCGTACAGGGAAAATATGAGTATCATGTAATagtctaaacctatcgatgttacattgagctgggtgaatggaatatgaatgacagtcattcaatatgctgtaatagaaaaaaggccatgctcattaaataataattgtccttcctcatcttaaacggcacagACCTCCACTGTGAAGCGTATGTGGTGCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428385 lncRNA upstream 39274 20420930 ~ 20421730 (+) True G376867
TU428382 lncRNA upstream 71249 20389505 ~ 20389755 (+) True G376864
TU428380 lncRNA upstream 72404 20388265 ~ 20388600 (+) True G376862
TU428374 lncRNA upstream 73299 20387280 ~ 20387705 (+) True G376859
TU428370 lncRNA upstream 76680 20384026 ~ 20384324 (+) True G376857
TU428491 lncRNA downstream 42681 20504021 ~ 20504333 (+) True G376972
TU428495 lncRNA downstream 51463 20512803 ~ 20513129 (+) True G376976
TU428497 lncRNA downstream 53401 20514741 ~ 20514942 (+) True G376978
TU428502 lncRNA downstream 59872 20521212 ~ 20521465 (+) True G376983
TU428518 lncRNA downstream 105952 20567292 ~ 20567543 (+) True G376999
XM_021602055.2 mRNA upstream 46848 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 79385 20051393 ~ 20381619 (+) False LOC110523391
XM_036977016.1 mRNA downstream 46734 20508074 ~ 20759255 (+) False LOC110522816
XM_036977017.1 mRNA downstream 46734 20508074 ~ 20759255 (+) False LOC110522816
XM_036977020.1 mRNA downstream 46734 20508074 ~ 20759255 (+) False LOC110522816
XM_036977018.1 mRNA downstream 74796 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA downstream 74796 20536136 ~ 20759255 (+) False LOC110522816
TU427802 other upstream 477156 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2377639 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2753247 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3578819 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 130140 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 282244 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 369918 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 646829 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1711195 22172535 ~ 22231920 (+) False G378660

Expression Profile