RNA id: TU428495


Basic Information

Item Value
RNA id TU428495
length 327
lncRNA type intronic
GC content 0.33
exon number 1
gene id G376976
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20512803 ~ 20513129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgactcaactccagccactttaataatgggaattgatgagaaatgatgtaaaatatatcactagccactttaaacaatgctacctaatataatgtttacataccctacattattcatctcatatgtatatgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgcactcaataccatctactgtatcttgcctatgccgctctgtaccatcactcattcatatatctttatgtacatattctttatcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428491 lncRNA upstream 8470 20504021 ~ 20504333 (+) True G376972
TU428457 lncRNA upstream 51463 20461004 ~ 20461340 (+) True G376938
TU428385 lncRNA upstream 91073 20420930 ~ 20421730 (+) True G376867
TU428382 lncRNA upstream 123048 20389505 ~ 20389755 (+) True G376864
TU428380 lncRNA upstream 124203 20388265 ~ 20388600 (+) True G376862
TU428497 lncRNA downstream 1612 20514741 ~ 20514942 (+) True G376978
TU428502 lncRNA downstream 8083 20521212 ~ 20521465 (+) True G376983
TU428518 lncRNA downstream 54163 20567292 ~ 20567543 (+) True G376999
TU428524 lncRNA downstream 59278 20572407 ~ 20573061 (+) True G377004
TU428580 lncRNA downstream 126069 20639198 ~ 20639463 (+) True G377057
XM_021602055.2 mRNA upstream 98647 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 131184 20051393 ~ 20381619 (+) False LOC110523391
XM_036977018.1 mRNA downstream 23007 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA downstream 23007 20536136 ~ 20759255 (+) False LOC110522816
XM_036977022.1 mRNA downstream 133142 20646271 ~ 20759255 (+) False LOC110522816
XM_036977021.1 mRNA downstream 157996 20671125 ~ 20759255 (+) False LOC110522816
XM_036977023.1 mRNA downstream 317982 20831111 ~ 20842676 (+) False LOC110522817
TU427802 other upstream 528955 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2429438 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2805046 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3630618 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 78351 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 230455 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 318129 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 595040 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1659406 22172535 ~ 22231920 (+) False G378660

Expression Profile