RNA id: TU428497


Basic Information

Item Value
RNA id TU428497
length 202
lncRNA type intronic
GC content 0.39
exon number 1
gene id G376978
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20514741 ~ 20514942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcacagttgcaaatgagaacttgttctcaactagcctacctggttaaacaatggtgaaataaaacaaataaatgggtggtgggaggagctatagatggacaggctcattgtaatggctggaatggaatcaatggaatcaaaccaaatgcatttataaaaccctttttacggatgtcacaaagtgcacatacagaaacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428495 lncRNA upstream 1612 20512803 ~ 20513129 (+) True G376976
TU428491 lncRNA upstream 10408 20504021 ~ 20504333 (+) True G376972
TU428457 lncRNA upstream 53401 20461004 ~ 20461340 (+) True G376938
TU428385 lncRNA upstream 93011 20420930 ~ 20421730 (+) True G376867
TU428382 lncRNA upstream 124986 20389505 ~ 20389755 (+) True G376864
TU428502 lncRNA downstream 6270 20521212 ~ 20521465 (+) True G376983
TU428518 lncRNA downstream 52350 20567292 ~ 20567543 (+) True G376999
TU428524 lncRNA downstream 57465 20572407 ~ 20573061 (+) True G377004
TU428580 lncRNA downstream 124256 20639198 ~ 20639463 (+) True G377057
TU428586 lncRNA downstream 132966 20647908 ~ 20648189 (+) True G377062
XM_021602055.2 mRNA upstream 100585 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 133122 20051393 ~ 20381619 (+) False LOC110523391
XM_036977018.1 mRNA downstream 21194 20536136 ~ 20759255 (+) False LOC110522816
XM_036977019.1 mRNA downstream 21194 20536136 ~ 20759255 (+) False LOC110522816
XM_036977022.1 mRNA downstream 131329 20646271 ~ 20759255 (+) False LOC110522816
XM_036977021.1 mRNA downstream 156183 20671125 ~ 20759255 (+) False LOC110522816
XM_036977023.1 mRNA downstream 316169 20831111 ~ 20842676 (+) False LOC110522817
TU427802 other upstream 530893 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2431376 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2806984 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 3632556 16870434 ~ 16882185 (+) False G372618
TU428545 other downstream 76538 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 228642 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 316316 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 593227 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1657593 22172535 ~ 22231920 (+) False G378660

Expression Profile