RNA id: TU428616



Basic Information


Item Value
RNA id TU428616
length 203
lncRNA type intronic
GC content 0.41
exon number 1
gene id G377091
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20684113 ~ 20684315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCTTCCTCAGCACAGCATGGTCCACCAGTCACTaagttctccctctctgtttccacATTCAGAGGAACTACAACAACACCATCTACAAAACATTTGATTGAAAGGGAATGTATGTGGTGGCTAGTGAGAGGAGCTATAGGAAGACAGGCTtattataatgtctggaatggaataaatggaacggtataaaacacatgaaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428609 lncRNA upstream 3327 20680498 ~ 20680786 (+) True G377084
TU428606 lncRNA upstream 8665 20675248 ~ 20675448 (+) True G377081
TU428603 lncRNA upstream 16747 20667047 ~ 20667366 (+) True G377078
TU428596 lncRNA upstream 22555 20661352 ~ 20661558 (+) True G377071
TU428589 lncRNA upstream 32042 20651832 ~ 20652071 (+) True G377065
TU428625 lncRNA downstream 12879 20697194 ~ 20702214 (+) True G377099
TU428631 lncRNA downstream 21376 20705691 ~ 20705897 (+) True G377105
TU428632 lncRNA downstream 24608 20708923 ~ 20709145 (+) True G377106
TU428633 lncRNA downstream 25208 20709523 ~ 20742643 (+) True G377107
TU428651 lncRNA downstream 75431 20759746 ~ 20760016 (+) False G377125
XM_021602055.2 mRNA upstream 269957 20390530 ~ 20414156 (+) True LOC110523393
XM_036977015.1 mRNA upstream 302494 20051393 ~ 20381619 (+) False LOC110523391
XM_036977023.1 mRNA downstream 146796 20831111 ~ 20842676 (+) False LOC110522817
XM_021601313.2 mRNA downstream 174027 20858342 ~ 20859762 (+) True pnx
XM_036977024.1 mRNA downstream 197623 20881938 ~ 20897867 (+) True LOC110522818
XM_021602058.2 mRNA downstream 213806 20898121 ~ 20910637 (+) True LOC110523395
XM_021602060.2 mRNA downstream 238699 20923014 ~ 20944043 (+) False ccar2
TU428545 other upstream 87250 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 700265 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2600748 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 2976356 17704113 ~ 17707757 (+) True G373726
TU423601 other upstream 3801928 16870434 ~ 16882185 (+) True G372618
TU428462 other downstream 59269 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 146943 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 423854 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1488220 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1488220 22172535 ~ 22231920 (+) True G378660

Expression Profile