RNA id: TU428790



Basic Information


Item Value
RNA id TU428790
length 305
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G377243
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21024964 ~ 21025268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtattcttcactggttgcccttttctcgtggcaacaggtcacaaatcttgctgctgtgatggcacactgtggaatttcacccagtagatatgggagtttatcaaaattggatttgttttcgaattctttgtggatctgtgtaatctgatggaaatatgtctctctaatatggtcatacattgggcaggaggttaggaagtgcagctcagtttccacctcattttgtgggcagtgagcacatagcctgtcttctcttgagagccatgtctgcctacggcggcctttctcaatagcaaggcta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU428788 lncRNA upstream 1595 21022705 ~ 21023369 (+) True G377241
TU428787 lncRNA upstream 5057 21019662 ~ 21019907 (+) True G377240
TU428726 lncRNA upstream 28256 20993705 ~ 20996708 (+) True G377184
TU428731 lncRNA upstream 31988 20946529 ~ 20992976 (+) True G377188
TU428725 lncRNA upstream 80926 20943592 ~ 20944038 (+) True ccar2
TU428798 lncRNA downstream 8674 21033942 ~ 21034516 (+) True G377251
TU428812 lncRNA downstream 18421 21043689 ~ 21043996 (+) True G377261
TU428824 lncRNA downstream 46106 21071374 ~ 21071582 (+) True G377272
TU428805 lncRNA downstream 75063 21100331 ~ 21103100 (+) True G377255
TU428844 lncRNA downstream 87626 21112894 ~ 21125541 (+) True G377292
XM_021602064.2 mRNA upstream 33588 20952149 ~ 20991376 (+) False LOC110523398
XM_021602063.2 mRNA upstream 33623 20952149 ~ 20991341 (+) False LOC110523398
XM_021602062.2 mRNA upstream 42561 20952150 ~ 20982403 (+) False LOC110523398
XM_021602065.2 mRNA upstream 42563 20952166 ~ 20982401 (+) True LOC110523398
XM_021602060.2 mRNA upstream 80921 20923014 ~ 20944043 (+) False ccar2
XM_036977026.1 mRNA downstream 25668 21050936 ~ 21099289 (+) True LOC110522819
XM_021602067.2 mRNA downstream 82861 21108129 ~ 21160140 (+) False LOC110523400
XM_021602076.2 mRNA downstream 252300 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 448585 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 453417 21478685 ~ 21493435 (+) False LOC110523407
TU428679 other upstream 188405 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 266463 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 428101 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1041116 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 2941599 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 82901 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1147267 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1147267 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1478484 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1576842 22602110 ~ 22629669 (+) True G378868

Expression Profile